3300008577: Planktonic microbial communities from coastal waters of California, USA - Canon-6

Overview

Basic Information

• IMG/M Taxon OID: 3300008577
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126504 | Ga0103915
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-6
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1086171
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011139	Metagenome / Metatranscriptome	294	Y
F019998	Metagenome / Metatranscriptome	226	N
F030104	Metagenome / Metatranscriptome	186	Y
F051119	Metagenome / Metatranscriptome	144	N
F054876	Metagenome / Metatranscriptome	139	N
F064638	Metagenome / Metatranscriptome	128	N
F074867	Metagenome / Metatranscriptome	119	N
F091607	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103915_10076	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri	1645
Ga0103915_10150	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1296
Ga0103915_10658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	765
Ga0103915_10711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	742
Ga0103915_10734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	731
Ga0103915_10800	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	710
Ga0103915_10947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	663
Ga0103915_11078	Not Available	634

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103915_10076	Ga0103915_100761	F054876	MENSISLGLLHGLVYGIVPAAPWFVALKRYLLEGKERGQLAVAGTIAGQVSLLALTFFGWNQVLWIWYYFEPALIILGTMAVGRCALDCWVEQTSSLQTEPVPLANKKEGFYYFLVNFGLMFCNPAHLEGSQTLFSSIPGNRYFYLIAFTITYSGIILAFWATLGYRIFGKAYAGLGPQQTLTRYRIRRVAVGMVAALFIQFANCTPEALVVYHFDSLFTYTPFEQFKHHKTRGYIWEPVTNGSIGFSRQSTRTTNKQGILMDQEEKADITHKSMWNNQVRYDECNQTRERELDNDEWNEEASFHEFGGVNQATLHARLVPFNLYMVPKWERQENKDFVLTLRKIRDEMDEKLLSSGNSYAQNASLPFSDEWDVELDYIINPSALAEKAESKGAYKDMQKFIRSTKWTSNHLHLGNGFDTEASYAKLHKLPAEVRLPWHYPAVKPLETKFLPPASRQTPEEIESLNQQIQANAEFLANEPDRIQPDIYRRLSEYRMSRKTTPRPFDAEREARLKAESEFRRNTYSIPD
Ga0103915_10150	Ga0103915_101501	F011139	MGLFLGSLAFLPVIYNVYNAMHKYVATIPMQNSILQTSAFIFFMLSLFCANSMLPCGRYYYDPEVGYVGNP*
Ga0103915_10658	Ga0103915_106582	F019998	YKVNTVVGQVVNLYEVGTTTTASLDYAASANAIVVGFTTLAWQPLRIIEARRVDLCSDIEVPLMIVGKFDYERIPNKAMASIPLWLYAQTMIAETQVFVWPPTAYANWAIGYSFERRYQDVDSGINSMDFPPESYESLRYGLAARLGDEFPIDPQRQAMLVGNAAGYFTAMRQASSGNASVKFGVRG*
Ga0103915_10711	Ga0103915_107112	F074867	MSSRGITDIILNGEAFELHPTFSNLDKLETVLNKGAIAYLRQDLSRVAFTTGDPVSIIQVCAVAANIRKFPSWWTRDGVGEAVISAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK*
Ga0103915_10734	Ga0103915_107341	F051119	MRISEAFEQFDALRFANALGLEYGVVCKWRDREQIPVYWRTRFVNLMNNHNVAIKLHDLAGWIK*
Ga0103915_10800	Ga0103915_108001	F030104	MTLLTFDDDQDEIIELVDSSFFYVFTIIVIYLIYKHSIHYFAFLEASVSEGRSVNFVTVQFVKDFLATFSLMLRFYILLFRMNVYDTLEDFFDSYYIFIGDFDDDEYLNELFLSIHVTILFTFDNH
Ga0103915_10947	Ga0103915_109472	F091607	MSLELQISELNATIKTLNENILLLLGSKEQHSKVECSPIEPVNLGQTQQQTFLPEVAKSDEYTRGQLQTLCLEATKRNAANRDIIKAIMSVTLKPARLAT*
Ga0103915_11078	Ga0103915_110781	F064638	DMSKFKKKLKKAALAGIALYGASKMLGAQKTAAPIGAPASAKTPSSSKINAKKRVIDLGPDTKNLVGKTTKTTVDVNASGKEIEEKASKIKATQKKINKAVVKRKEAGMLSPTMPKSESQYDALTKNNSGLDMFGCAKKGKMIRARGGGLAKGGMRPTKLY*