3300008570: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-F-D

Overview

Basic Information

• IMG/M Taxon OID: 3300008570
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117973 | Gp0126367 | Ga0103778
• Sample Name: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-F-D
• Sequencing Status: Permanent Draft
• Sequencing Center: Centre National de la Recherche Scientifique (CNRS)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14919608
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Champs-sur-Marne, France
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015858	Metagenome / Metatranscriptome	251	Y
F034926	Metagenome / Metatranscriptome	173	N
F100333	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103778_101191	All Organisms → Viruses → Predicted Viral	1358
Ga0103778_104831	Not Available	533
Ga0103778_105275	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103778_101191	Ga0103778_1011912	F015858	VSNLIGWGIVYCSTWFGQADETTLSIQNESAPPCFAPANDIATPFLERVEADGGTFEGYDCLVAALQDLGEDTYYDIFDTYIQRMTDDGATLEGEECLIDQLFILN*
Ga0103778_104831	Ga0103778_1048311	F100333	QIGKMVYFTYKKLNICTVALLATVFAVLIAAMAVDWYSYKVEFSYTRVAASDSSLASSLYNYTQTNFDMFGQTVNTQGANTKIVRTVQQTYAQLGASNVNEQFKIQQAFVLIALLAAGLLFVAHTLYFFDGFRNKILFFVGITALRTILVIALLVVVASEIIAFLAFLGLSDKIASD
Ga0103778_105275	Ga0103778_1052751	F034926	MGYIEVYNIDKDGEWTDLDDIPMITVINCQLCNEPTEAHDIIIPAVIKDGVLTAGTWQCRKCKTVNG*