3300008569: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-F-N

Overview

Basic Information

• IMG/M Taxon OID: 3300008569
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117973 | Gp0126368 | Ga0103779
• Sample Name: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-MB-F-N
• Sequencing Status: Permanent Draft
• Sequencing Center: Centre National de la Recherche Scientifique (CNRS)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12098537
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1
Not Available	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Champs-sur-Marne, France
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034926	Metagenome / Metatranscriptome	173	N
F043238	Metagenome / Metatranscriptome	156	Y
F082866	Metagenome / Metatranscriptome	113	Y
F100333	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103779_100649	All Organisms → cellular organisms → Eukaryota → Metamonada → Fornicata → Diplomonadida → Hexamitidae → Hexamitinae → Trepomonas → unclassified Trepomonas → Trepomonas sp. PC1	1494
Ga0103779_101930	Not Available	798
Ga0103779_103003	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	604
Ga0103779_104083	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103779_100649	Ga0103779_1006491	F082866	MHHQLPNRKRTLNLLLRKASGSGKICVLGQIEPQTPRLVVSFRQYLQVSILQSYSPQNPKPYGFPGDADVNARF*
Ga0103779_101930	Ga0103779_1019301	F043238	MKTIAQTLRELKTVDLSESMLKDIELMEQINLRHAYHDALIRVPFEEWYESNFRK*
Ga0103779_103003	Ga0103779_1030032	F034926	RWEVSTTEGESVMGYIEVYNIDKDGEWTDLDDIPMITVINCQLCNEPTEAHDIIIPAVIKDGILTAGTWQCRKCKAVNG*
Ga0103779_104083	Ga0103779_1040831	F100333	QIGKMVYFTYKKLNICTVALLATVFAVLIAAMSVNWYQYKVEFSYPLVTASDSSLASSLYNYTETTFDMYGQTVNTQGANTKIVRTVQQTYAQLGASNVNEQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILVIALLVVVASEIIAFLAF