3300008564: Planktonic microbial communities from coastal waters of California, USA - Canon-33

Overview

Basic Information

• IMG/M Taxon OID: 3300008564
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126519 | Ga0103930
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-33
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 612292
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027881	Metagenome / Metatranscriptome	193	Y
F090440	Metagenome / Metatranscriptome	108	N
F090442	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103930_1105	Not Available	914
Ga0103930_1501	Not Available	536
Ga0103930_1513	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103930_1105	Ga0103930_11051	F027881	ERVRGVLTHANCTKIKFNLSSVRVSNSLMTFIKFV*
Ga0103930_1501	Ga0103930_15011	F090442	ALYESGKSGIRRGIPARPKKCIGKKHKLTPMKVVQK*
Ga0103930_1513	Ga0103930_15131	F090440	TSLGGNEISGLKLATDLRLKRVYHCRITDVGEDDDLRIIIRKSIGG*