3300008563: Planktonic microbial communities from coastal waters of California, USA - Canon-42

Overview

Basic Information

• IMG/M Taxon OID: 3300008563
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126525 | Ga0103936
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-42
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2423443
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003081	Metagenome / Metatranscriptome	508	Y
F026579	Metagenome / Metatranscriptome	197	N
F097458	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103936_10826	Not Available	717
Ga0103936_10887	Not Available	704
Ga0103936_11231	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	633
Ga0103936_12249	All Organisms → cellular organisms → Bacteria	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103936_10826	Ga0103936_108263	F026579	PRQDMKMNLIVLMLAIIAISVSQPSFSKTVSEVKIIFADEEGEGSPTDEEPDCE*
Ga0103936_10887	Ga0103936_108871	F097458	YKLPPIFLSFTFAALLPRRGIYALADIQKIFIQNIIPIDSRYGLLGSPILLDNLVIPLILLISF*
Ga0103936_11231	Ga0103936_112311	F003081	MFNDTRFGAEVFYMHLRGVDTVFFFTYLHILKKIYLKNYVTAESDG*
Ga0103936_12249	Ga0103936_122492	F002495	SDNGSGKQKDWVLFPYDANNEKAIRIDFSGNVNLDNGNKGTILGVKGASKNGNTKFVKVFAQVGVLFKGDDKFTGEMNYAEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF