3300008551: Human stool microbial communities from NIH, USA - visit 1, subject 158802708 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008551
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052946 | Ga0111058
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 158802708 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 187120648
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/2	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042936	Metagenome	157	N
F070133	Metagenome	123	N
F072366	Metagenome	121	N
F078004	Metagenome	117	N
F078822	Metagenome	116	N
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N
F099406	Metagenome	103	N
F101193	Metagenome	102	N
F101355	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111058_100031	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	146149
Ga0111058_107787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3641
Ga0111058_108999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3045
Ga0111058_109884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2734
Ga0111058_110133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2647
Ga0111058_118242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1365
Ga0111058_132330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/2	749
Ga0111058_138029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	636
Ga0111058_138360	Not Available	630
Ga0111058_147839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	503
Ga0111058_148099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111058_100031	Ga0111058_100031140	F099406	MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTKEGGTKVLESLGMVSTGVDSSYLDLSIFPSTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDVGREWQVRVNNTTGTDITQPLPISGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0111058_100858	Ga0111058_1008584	F078004	MLRHTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLIIGTIFHNTF*
Ga0111058_107787	Ga0111058_1077874	F078822	SKVVLFVKHFFDIFLSFPNAFLKAFHPRAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0111058_108999	Ga0111058_1089993	F087335	MIELYFNDANLLPENREEEQYAEATLNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCVTEETVEKMYQRVSNYD*
Ga0111058_109884	Ga0111058_1098841	F070133	RCGATEEEKRMKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE*
Ga0111058_110133	Ga0111058_1101332	F088921	LGGCKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRNKMWSK*
Ga0111058_118242	Ga0111058_1182424	F026592	SVFVFPNLLAANSILCCLRTASPQGIDAQASQGSVAPLTERSDETFSVGQFSSADWE*
Ga0111058_132330	Ga0111058_1323302	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFSKYCLTIPDVLAII*
Ga0111058_138029	Ga0111058_1380291	F072366	DILAIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRTKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNDMDQAVQSDFDDALTWYRDNGRKLLEAKKQDE*
Ga0111058_138360	Ga0111058_1383601	F042936	KGRVWKPKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLGKVYFRSRLRGKG*
Ga0111058_147839	Ga0111058_1478391	F101193	MARKCTEYHYFKHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLMPIEFVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETRKFRDLQEH*
Ga0111058_148099	Ga0111058_1480992	F088914	SRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMNVK*