3300008547: Human stool microbial communities from NIH, USA - visit 1, subject 159733294 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008547
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052942 | Ga0111055
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159733294 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 157217036
• Sequencing Scaffolds: 12
• Novel Protein Genes: 17
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032312	Metagenome / Metatranscriptome	180	N
F044554	Metagenome	154	N
F059106	Metagenome	134	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067844	Metagenome	125	N
F071325	Metagenome	122	N
F080163	Metagenome	115	N
F087334	Metagenome	110	N
F087336	Metagenome	110	N
F089054	Metagenome	109	N
F090514	Metagenome	108	N
F101355	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111055_100149	Not Available	85034
Ga0111055_100244	Not Available	66120
Ga0111055_101010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	21994
Ga0111055_101293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17706
Ga0111055_103265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	7266
Ga0111055_103637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6521
Ga0111055_106309	Not Available	3679
Ga0111055_106540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3536
Ga0111055_127108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	810
Ga0111055_128348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	775
Ga0111055_133524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	658
Ga0111055_135988	All Organisms → cellular organisms → Bacteria	613

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111055_100149	Ga0111055_10014978	F089054	MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPNQEINKNHLHSEFIRLRLREILQIDLSDITIIDIIPLP*
Ga0111055_100244	Ga0111055_1002443	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEGILDYSNNLMNLLVNAYVENQCLAVSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0111055_100244	Ga0111055_1002445	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDRVITKEKYQAVKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQYNWLKEFELLVFKENYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0111055_100244	Ga0111055_10024481	F032312	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPSYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0111055_100244	Ga0111055_10024482	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLEHSGTAMGMCNIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDKEGRISGYWFPYYKKYIPHRIKVLKLALKDLVRIKILNARDVFILWLLCVLCLGMPLTCV*
Ga0111055_100244	Ga0111055_10024483	F080163	MKTIKLLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESIDDFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTNVLIQGFFYNTHRDLSFSTKLESEILNSEIELLQEKLDLIREEICELMGIDPNLQKKGHEENYIFNLNIDSDNQIGFLLQATEL*
Ga0111055_100244	Ga0111055_10024490	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTVQLFNLEF*
Ga0111055_101010	Ga0111055_10101023	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG*
Ga0111055_101293	Ga0111055_10129314	F087336	MVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP*
Ga0111055_103265	Ga0111055_1032651	F044554	RHPGDPPECGGSAQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFDQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL*
Ga0111055_103637	Ga0111055_1036372	F087334	MVSRYPFVGSAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ*
Ga0111055_106309	Ga0111055_1063091	F071325	ALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVYRFYLAFEELLSCATAYL*
Ga0111055_106540	Ga0111055_1065404	F101355	MAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0111055_127108	Ga0111055_1271082	F067844	NTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0111055_128348	Ga0111055_1283481	F059106	RVILLQKFVWIVDLKVREHLTEYLKKNIKYHRVTTGVHA*
Ga0111055_133524	Ga0111055_1335242	F026592	PQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
Ga0111055_135988	Ga0111055_1359882	F026592	LAANSILCCLRTASPQGIAALAAQGGVATLTERSDETFSVMQFLSADRE*