3300008512: Human stool microbial communities from NIH, USA - visit 1, subject 160643649 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008512
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053231 | Ga0115181
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160643649 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96226593
• Sequencing Scaffolds: 9
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F089005	Metagenome	109	N
F089054	Metagenome	109	N
F090513	Metagenome	108	N
F090514	Metagenome	108	N
F101355	Metagenome	102	N
F101356	Metagenome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115181_100176	Not Available	84921
Ga0115181_100780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16971
Ga0115181_100924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	13116
Ga0115181_101500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	6473
Ga0115181_102617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3508
Ga0115181_102758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3353
Ga0115181_105581	Not Available	1770
Ga0115181_114136	All Organisms → cellular organisms → Bacteria	768
Ga0115181_122645	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115181_100176	Ga0115181_10017667	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDGFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0115181_100176	Ga0115181_10017669	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLGEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0115181_100176	Ga0115181_10017679	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0115181_100176	Ga0115181_10017683	F080163	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKILFVIITYMNTYFGFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLKSEILDSEIELLQEKLDLIREEICELIGVNPNLEKQGHEDNYVFNLNIESDNQIGFFLQETEL*
Ga0115181_100176	Ga0115181_10017686	F032312	MPKIKDYDEDLSAPKLLRERARDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0115181_100780	Ga0115181_1007803	F029444	MEVSGQLTGFELEDLKFWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDS*
Ga0115181_100924	Ga0115181_10092415	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQELRI
Ga0115181_101060	Ga0115181_1010605	F101356	MDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSDSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0115181_101500	Ga0115181_1015004	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPHGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSFLESPCILCSLLRYFHILSKKLQKTC*
Ga0115181_102617	Ga0115181_1026174	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTPLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA*
Ga0115181_102758	Ga0115181_1027583	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAVPFLFCG*
Ga0115181_105581	Ga0115181_1055813	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIVPQSVGNKNGTKAVLQGWAAAFVPFFTY*
Ga0115181_114136	Ga0115181_1141362	F089054	MLTKGKFLVSFEVPGPTKEYTEGFTEEMVIPYRTEELRPYLRYPNQEINNNHLHSEHIRLQIREILQIPLSDITIIDIISLP*
Ga0115181_122645	Ga0115181_1226451	F052660	MCILRVLPENTPEKIGQEWAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWPA