3300008507: Wastewater microbial communities from the domestic sewers in Singapore - Site 2

Overview

Basic Information

• IMG/M Taxon OID: 3300008507
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118187 | Gp0131417 | Ga0110934
• Sample Name: Wastewater microbial communities from the domestic sewers in Singapore - Site 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 123134772
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
Not Available	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1
All Organisms → Viruses → unclassified bacterial viruses → Methanosarcina virus MetMV	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Phragmitibacter → Phragmitibacter flavus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Microbial Communities From The Domestic Sewers
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Domestic Sewers

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003081	Metagenome / Metatranscriptome	508	Y
F004010	Metagenome / Metatranscriptome	457	Y
F008183	Metagenome / Metatranscriptome	337	Y
F008498	Metagenome / Metatranscriptome	332	Y
F019483	Metagenome / Metatranscriptome	229	Y
F024268	Metagenome / Metatranscriptome	206	Y
F026273	Metagenome / Metatranscriptome	198	Y
F031865	Metagenome / Metatranscriptome	181	Y
F032274	Metagenome / Metatranscriptome	180	Y
F034611	Metagenome / Metatranscriptome	174	Y
F037115	Metagenome / Metatranscriptome	168	N
F046373	Metagenome / Metatranscriptome	151	Y
F058173	Metagenome / Metatranscriptome	135	N
F061021	Metagenome	132	Y
F064603	Metagenome / Metatranscriptome	128	Y
F068794	Metagenome / Metatranscriptome	124	N
F083890	Metagenome / Metatranscriptome	112	Y
F088496	Metagenome / Metatranscriptome	109	Y
F091362	Metagenome / Metatranscriptome	107	Y
F095393	Metagenome	105	N
F100666	Metagenome	102	Y
F103371	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110934_1000176	All Organisms → Viruses → Predicted Viral	2137
Ga0110934_1000325	All Organisms → cellular organisms → Bacteria → Proteobacteria	8473
Ga0110934_1004464	All Organisms → Viruses → Predicted Viral	1995
Ga0110934_1008842	Not Available	1442
Ga0110934_1009801	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	953
Ga0110934_1011084	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1037
Ga0110934_1018406	Not Available	515
Ga0110934_1023084	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	599
Ga0110934_1024659	All Organisms → Viruses → unclassified bacterial viruses → Methanosarcina virus MetMV	801
Ga0110934_1029536	All Organisms → cellular organisms → Bacteria → Proteobacteria	878
Ga0110934_1036608	All Organisms → Viruses → Predicted Viral	2408
Ga0110934_1040301	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1326
Ga0110934_1051891	Not Available	557
Ga0110934_1052988	All Organisms → Viruses → Predicted Viral	1901
Ga0110934_1055198	Not Available	566
Ga0110934_1063289	Not Available	592
Ga0110934_1065198	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	966
Ga0110934_1075136	Not Available	994
Ga0110934_1085040	Not Available	591
Ga0110934_1097594	Not Available	765
Ga0110934_1129684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Phragmitibacter → Phragmitibacter flavus	595

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110934_1000176	Ga0110934_10001763	F019483	MAVIGQSEIDFGAFPGNNEASVTVTGQTGILNTSSVEAFIMADDTTTDHTASDHKYLSVFIGLTCSTPVTATGFTIYARSLEKLQGKFKIRWVWAN*
Ga0110934_1000325	Ga0110934_10003252	F095393	MNHKAEYEAIKKQIAECEQELKNRCIECSNFNKKKGECLKHGFVPVEFIYQKNDCLDYDLLPF*
Ga0110934_1004464	Ga0110934_10044642	F061021	MAAQDYEQVTYNGPAGAQIGKSATEKVAFYGAVPVVQRPYSSAVHATSALASSSAFGATQLAAVQEIQKTLIGLGVWATA*
Ga0110934_1004665	Ga0110934_10046653	F103371	MSYDDWKTHNPDDDRCEFCGAAPWEFKGGWQPNRCNGECRQSFRDPDAEYDRMRDEG*
Ga0110934_1008842	Ga0110934_10088421	F032274	LMQELGLEKTMQVSFDFTEQTEIVKREKRKHLEARQDWQRAPKIIVTEEYIALDKKLEPIEEELFDLIKKMPLAIEKKIKGKICVIPSGLKTDEELISRVRELRKQASKIGKELDDLFFKTNPEWAKFYEYIKPN*
Ga0110934_1009801	Ga0110934_10098012	F064603	MTIKKFDYSKSTEDIFYKIIYPLYPREFMFGNNYEQFAFLVSANFILNAPQWEYILEHWEQKESILTIETK*
Ga0110934_1011084	Ga0110934_10110842	F088496	MKTNFDFNEDKIDLQKNQHLMSIWQNGEKFGDIEMFDGKIITSGIIGYNQYDNFVELIKGLQGFDIKIDDFYW*
Ga0110934_1018406	Ga0110934_10184062	F008183	VAFDDADFDPVKYGVLWQKVQDMDKKVDKMERQLDQLLELANRSKGGLWFGMTIASAVSGIIGFVISHWKG*
Ga0110934_1023084	Ga0110934_10230842	F026273	EVDFEDDKTYLKILIFNKIQQAIARKKDIYYLPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRKNQEIIEEVFNNLSKFSNSQIIRDY*
Ga0110934_1024659	Ga0110934_10246592	F037115	MRVKHGSDTYPEIIVKSAGKTQVRYDIEETEFEEMDGTKRACYDFSYVAIEGELTRAKIIDAIIADEIGSKDAELALINNELASPGTAEYAAYQALRQHAKEIATEVLP*
Ga0110934_1029536	Ga0110934_10295361	F083890	VDAMTTAKTAAQRQAERKARELAAGRVQWKRWVHPDDVPALAEYADKLARKRDRAEQKAG
Ga0110934_1036608	Ga0110934_10366086	F046373	MINSFKAEFHCFVVAHNNVDDYRICELNEGNELSSLLPYFEQFDTYELALARVPAEFRPNDQQL*
Ga0110934_1040301	Ga0110934_10403011	F003081	MREEMFEDTRFGAETFAMHVRGVDVIFVFSYFHILKKIYLKNYITVDGDG*
Ga0110934_1051891	Ga0110934_10518911	F008498	LIAELDLEIMMATVTYKNQPAIDKTKGKIPLAGNSHVYRVKKRLWNDSIEDVLQGLFIGRTLHVCCGKSLLGDVRLDADAENNPDIICDASKMQDFVKDNEFETVICDPPYNGNFQWNHDLLTELSRVASKRIIFQHWFIPANPTGTYKKAQEKFLLSDVLVWQPKTYFGRVQVVSVFDAVS*
Ga0110934_1052988	Ga0110934_10529887	F004010	MPLGKNIGKNIKELQADNKKKGKARGANGKPRSKKQILAIALSAAGKSKK*
Ga0110934_1055198	Ga0110934_10551981	F091362	VEGRHYQNKLVYLQKIKIMGELLKILKEQNSSELITKWENIGFLSNTKNKRNSALACEISALYLLDNIEKYNGDITTLTHPVIVRIFRKIEENLPTELIFDKVIEIITEFKIKLDEFQKSDEWINRGENKVKDVEAEFLAEFSDNFPFLFGPVCG*
Ga0110934_1063289	Ga0110934_10632892	F058173	MKITYWIAIGVAVVVLVVAALMCGRYHPDPDVIGRLTDQIRLETIKQYDQRINELNIQLKTSQAAYIESQKRYDTIIKKIKELKDGKDNIKPPADSAELTARFNNLGYTPTGK*
Ga0110934_1065198	Ga0110934_10651982	F034611	MLQSNTVLSLTMDLLAHNAFNHLRDDDISALHHFILKLTEPLSPIQQNLLLTFWSHACTTDLPAPLLHRCNSILLQTGRQPMEMLQMEMEMYG*
Ga0110934_1075136	Ga0110934_10751361	F031865	MSFDTLKVAELRNVAESFGVDFEGAKNKKDIIAMLAEEGVTYEVY
Ga0110934_1085040	Ga0110934_10850402	F100666	MSMTFTSLKEDVKRYLERGTTATQDPAFIAQLPSLINFAERRIAQELKIEGFINVVTGTFTVSEPVL
Ga0110934_1097594	Ga0110934_10975942	F024268	MAIAELYTGTEAISTTEHSLTTDTSGPDADTTDGVFQAFLDVSDMIAGDQLQIRVYEKVRSGDTQRIVYESILTGAQSEPIWVSPSLILMHGWDFTCDALAGTITVNWSIRQVA*
Ga0110934_1129684	Ga0110934_11296841	F068794	MKKEKGFIFNHKTITIRGSFINMLFTMVLMTLFIVAAFKKEVADNLKMIAELIIAIYAISYGVWQGKKFLENKEKKKEEEPKE*