3300008505: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764224817 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008505
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052921 | Ga0111014
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764224817 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88914304
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111014_100036	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	67915
Ga0111014_100891	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9186
Ga0111014_105734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	2619
Ga0111014_120796	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	847

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111014_100036	Ga0111014_10003645	F089056	MIFYRIVNLINSKFNPLIIKKMNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSVLLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0111014_100891	Ga0111014_1008912	F040685	MKKLLFKLFFALAFASIPLHGQEKIQQVEFSSFGGRALYSSRYTLNSLKKEFSAKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLNKFKKLRDGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDRKVWYDLLQIIAEEFGKKGIYE*
Ga0111014_105734	Ga0111014_1057345	F097526	MTTNDTKAITIYTQDDYRQLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHLGRALVEKTVYPVTVVSNLAWLLHEQYKSGQLQRDLRHTAAASGNGEILAMLEDCQKILEQKNL*
Ga0111014_120796	Ga0111014_1207962	F085821	MSNIFEQLAPLVETKKQQTTVAKFIEKGFKFTRQPDVQKFTFLVYDFFIAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHNDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANVNKTLSTIRSGETIASRKEDVVELAESLNDEYELNISLLDEYCRALLCTAETTESQQELVAEIQSHIALLKDLYKKVNKIK*