3300008500: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764062976 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008500
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053220 | Ga0115080
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764062976 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44328127
• Sequencing Scaffolds: 5
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F049707	Metagenome	146	N
F051213	Metagenome	144	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F077404	Metagenome	117	N
F081456	Metagenome	114	N
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115080_100020	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	108081
Ga0115080_100069	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44105
Ga0115080_100947	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6302
Ga0115080_104895	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1341
Ga0115080_111748	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	632

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115080_100020	Ga0115080_10002026	F077404	MNILKTAFAFFFALCFMMGANSYAQKTESINAEASKRELKRNAVYLPPALEEYTDTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSYFVQSYGRQAALETANTWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLSLYFLMIDSVALNFDTKVLPYIKGVFHFNRIQ*
Ga0115080_100069	Ga0115080_10006918	F074985	VELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0115080_100069	Ga0115080_10006919	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115080_100069	Ga0115080_10006925	F071329	MRPLYSKGILMLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0115080_100069	Ga0115080_10006928	F018385	LSRIFGTEITMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTATVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK*
Ga0115080_100069	Ga0115080_10006939	F081456	MFEEPPIYYILISLIFLIVFGAISMATWMVWLTAISFFAKLVITAIGFLLAAMTVILYTISAE*
Ga0115080_100947	Ga0115080_1009477	F051213	MKVSKFLWAVVMALTFVLTSCDPFSQNEPTIEGDHYKYFDSSVQRQSFRVVNGSGKQYNHKVDWHIIGIREENSDTYLTKKVDTLSNGDFRISYDWVTFTVKKNKSVIDVEVQKNETGKDRSVFFATRNSYKQAYLPNMIVTQRAK*
Ga0115080_100947	Ga0115080_1009478	F051213	MKASKFLWAVVIALTFVLTSCDPFSKNEPIVEGDVDKYFDSNAQHKSFRVLTAEGKPYNHKVDWHIVGIMVPYSDTYLTKKVDTLSNGDFRISYDWVTFTIKENKSVIDVEVQKNETGKERSVTFRPSNSYKQAYLPKIRVTQRAK*
Ga0115080_104895	Ga0115080_1048952	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFGERWAEYDETGWTVWYFRLVDGGVMTFSAREWEQRDDVNHLTTIWMKPSLYDIERKTS*
Ga0115080_111748	Ga0115080_1117481	F101360	MSKEDALRRAAVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQVGTVSVSAPAPKYQVVDERALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISTAQAAAI*