3300008497: Human stool microbial communities from NIH, USA - visit 1, subject 404239096 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008497
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052916 | Ga0111011
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 404239096 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107707196
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F055775	Metagenome	138	N
F067720	Metagenome	125	Y
F076064	Metagenome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111011_100211	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	52568
Ga0111011_100415	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	34214
Ga0111011_101712	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10577
Ga0111011_126188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	570

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111011_100211	Ga0111011_10021198	F067720	MSSTAYEHFVGANKMYAIQRRFRDFTKTFCDFVKVNKIDHLGNVTVMVRNAGQLPQPFWLGSACGGGSCGAARCAARA*
Ga0111011_100415	Ga0111011_1004157	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRDPMPVLKLY*
Ga0111011_101712	Ga0111011_10171215	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIACIEGGTIADVILVTKEVEKKISHAKIVSWLVDTTGDSPIYSILIVNANSADIKTIALN*
Ga0111011_126188	Ga0111011_1261881	F026592	CLQTASPQGIAAQASQGGVATLTERSDETFSVEQFSSADRK*