3300008495: Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763577454 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008495
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053214 | Ga0114893
• Sample Name: Human attached/keratinized gingiva microbial communities from NIH, USA - visit 2, subject 763577454 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82251370
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Attached/Keratinized Gingiva → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F043990	Metagenome	155	N
F047127	Metagenome	150	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114893_105570	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2431
Ga0114893_106653	All Organisms → cellular organisms → Bacteria	1998
Ga0114893_110938	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1205
Ga0114893_111701	All Organisms → cellular organisms → Bacteria	1130
Ga0114893_114297	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella	946
Ga0114893_117764	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	787
Ga0114893_120544	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	698
Ga0114893_121527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	670

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114893_105570	Ga0114893_1055701	F059076	LNYTLMTNRILLLGLLLGGASINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNAAANDGKPLLRLVDAPIYSKNVGSAMDADLGGNTATATNYTDYRPLMVDKVGDVYRGLPINNMSVLTLTISNVKGDWISEFDTGINYNKYAVAIMSYSFILPPYGPGNAVMLRGSFNTPNVIHGNGKHSVTTTPAFVILKKTGENWGIHADYPNLGPHEFTTGSTDLGPEVNGTWVITLLVGKKDAVNFTELRFSQDGKTTGQGTKDNAYKVGLENFLKKLE*
Ga0114893_106653	Ga0114893_1066533	F063777	LKVLNIKISALPPENNSFWMKLLFYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYILYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKIINGYNNKEQIEIL*
Ga0114893_110938	Ga0114893_1109382	F040685	MKKSLFKLFFALAFASISLHGQEKIQQVEFNSFGGMALYSSQYTLNSLKKEFSAKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLKIIAKEFGKKGIYE*
Ga0114893_111701	Ga0114893_1117011	F043990	MIKKLGIIFTFGVIILGIVVYADHKIERSWIEGELGVNMSNMNIDEKYREEEWAPNGDGEKTIILTYDQLDSCFTKLNKLPIKEGLPPNGIPKQFLNTTNGYYKYVVDENDDRNFDILIVDTTRKEIC
Ga0114893_114297	Ga0114893_1142971	F058221	MGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0114893_117764	Ga0114893_1177642	F047127	TFAFILLSIISLAKAQQTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK*
Ga0114893_120544	Ga0114893_1205442	F057446	MNSISFGKTSITSYPEYFEITDNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTENKIEKSKIKEVVVRKNRWASIVIHYGGKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0114893_121527	Ga0114893_1215271	F063778	MPETISEEAKRQLLRQLQDALGLVADAETSAQDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED*