3300008491: Human stool microbial communities from NIH, USA - visit 1, subject 159814214 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008491
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052914 | Ga0111008
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159814214 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 114134340
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F042910	Metagenome	157	N
F042936	Metagenome	157	N
F043945	Metagenome	155	N
F088921	Metagenome	109	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111008_100627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	25381
Ga0111008_103366	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	6343
Ga0111008_107435	All Organisms → Viruses → Predicted Viral	2375
Ga0111008_118369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	866
Ga0111008_124647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	645
Ga0111008_128464	Not Available	556
Ga0111008_128549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	554

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111008_100627	Ga0111008_1006277	F043945	MKHNLRAAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSPHPPGRGHAPAVVEEDLFLSGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMRWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLMPDMPGFFRWSAESSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE*
Ga0111008_103366	Ga0111008_1033662	F042910	VAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC*
Ga0111008_107435	Ga0111008_1074352	F097493	MYKFHMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDITFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLLLRIAEMEVAITNEQTTN*
Ga0111008_118369	Ga0111008_1183691	F088921	HFLSSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKDINGEIYGEKNQIIVANKSAMIRDKLRSK*
Ga0111008_124647	Ga0111008_1246471	F026592	TASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE*
Ga0111008_128464	Ga0111008_1284641	F042936	GRVWKPKEGIMKTSEIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0111008_128549	Ga0111008_1285491	F032286	MVKWVCQIVTHIRHRALVFDTRLFAGNTADDTLVTGGTFRFCRLMCPCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRIS