3300008485: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764325968 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008485
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052907 | Ga0110912
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764325968 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78831192
• Sequencing Scaffolds: 19
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → unclassified Capnocytophaga → Capnocytophaga sp.	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F041827	Metagenome	159	Y
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F067847	Metagenome	125	N
F074985	Metagenome	119	N
F081454	Metagenome	114	N
F090516	Metagenome	108	N
F092231	Metagenome	107	Y
F097525	Metagenome	104	N
F101358	Metagenome	102	Y
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110912_100055	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	45000
Ga0110912_100059	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42595
Ga0110912_100063	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	41078
Ga0110912_100179	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	19126
Ga0110912_100211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	16579
Ga0110912_100284	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	13967
Ga0110912_100340	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	12400
Ga0110912_100394	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	11666
Ga0110912_100466	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10400
Ga0110912_100846	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella	7540
Ga0110912_101042	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6682
Ga0110912_101135	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	6352
Ga0110912_101215	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6085
Ga0110912_102342	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4204
Ga0110912_102357	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4179
Ga0110912_102607	All Organisms → Viruses → Predicted Viral	3948
Ga0110912_104519	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → unclassified Capnocytophaga → Capnocytophaga sp.	2737
Ga0110912_116647	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1015
Ga0110912_117345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	980

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110912_100055	Ga0110912_10005532	F101360	MSKEDALRRAAVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQVGTVSVSAPAPKYQVVDERALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISTAQAGAIQELIASGDIRMIEVGGD*
Ga0110912_100059	Ga0110912_10005927	F101360	VSKENALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTPQEEAIRDLISTGDISLLEIEGGDA*
Ga0110912_100063	Ga0110912_10006318	F061925	MSWEYSLNLDSEESASLVVMDLKFCKLFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLNDCDTDEEVTLEHIFHSVI*
Ga0110912_100179	Ga0110912_1001794	F054111	MVFKNLEKENMNKPLDNITHEVFLKLIEHLKNLKEFTFLEYIMAPEADIFYFNFMEKTMKIKWDLDYGLSLETKALSTSDKDLFLNILHKEILSLENQ*
Ga0110912_100211	Ga0110912_1002113	F059076	MLSKFCQWQQLIQFIYSFFHFNFLLYLCHLKFTLMTNRILLLGLLLGGVSINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVDSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLQNFLQKLE*
Ga0110912_100284	Ga0110912_10028411	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNVKTSKNILFENEQFKLKKEDYLPDKNSQEYKIFDDFCAKSNKHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTRKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*
Ga0110912_100340	Ga0110912_10034012	F064819	VILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINNIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQEIKKYK*
Ga0110912_100394	Ga0110912_1003943	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESTISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIINGKKMEVKNVEGNINEDTKKILIESIKRFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNVKYKLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0110912_100466	Ga0110912_1004661	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPVYIYNNREYQIACEFLRQIMHDKIDLKDEWL
Ga0110912_100466	Ga0110912_10046611	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQAQQDPKYKELDDKLKETELNNL*
Ga0110912_100846	Ga0110912_10084610	F051212	KQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYHLTEGVVNKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSQLDNHLNLEK*
Ga0110912_101042	Ga0110912_1010425	F097525	MQQKKIMFKIQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIASVSYDEEPYQLTFSLDDKTLAMIIKELGEAVASFKKE*
Ga0110912_101135	Ga0110912_1011353	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPHDMFENTDFKKKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYGDISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMLEIMKLARILDLPLKAYFK*
Ga0110912_101215	Ga0110912_1012153	F061927	MKNSIFILSAMFILGACSSDSAQXXXXCSNDSAQKATEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0110912_102342	Ga0110912_1023423	F064818	MGERKKHPIPNNINGNTPKLYFTKHKFIVVLLPYFTYMNKDEFLKELIAFIADNSSELHPKVFKNKIWFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0110912_102357	Ga0110912_1023573	F101358	MTEKHSASLPPRQEHLLTQPITTDGTPKERTTHLDTHIIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDEDGTVLVRMTKPVHRSNIDKLEKCVPLAVLQEQNLDLTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEHQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE*
Ga0110912_102607	Ga0110912_1026075	F027205	MRAVKDSEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0110912_104519	Ga0110912_1045193	F041827	MKHFLSILALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRSYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNVKTRDFHDDDYMLYKYDDDKGNSYDGDYPTKIFVFDKSHNDPTYSHQLWMFNASRYYIKEE
Ga0110912_111923	Ga0110912_1119231	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAIYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPPESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEVRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRV
Ga0110912_116647	Ga0110912_1166471	F101358	PEYLLARPIAADGAPQERTPHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWVDVEIITEDGVTLMRMAKPVNRSNIDRLEKCVPLAVLQEQNLDFTNTYLQRAYGMTMKDGRLQPVADAAHATHQNDSTDEQETEVLLAQRDDTHEYLSRDSARQLVGSVAAKASGEVDNSSLVRRALGRVR*
Ga0110912_117345	Ga0110912_1173452	F092231	VRECTAPTSLPDEFSVCAGNNGGRVILGDDRSGNVRDLFLSMARNGAEDDEGAAELNDHFVSCVAAGREAWGEPFLLEAGDGPGVTWRFPGDMFAQVTGGFTAVLFNFFTPEGRRQFL*