3300008454: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160643649 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008454
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053269 | Ga0115310
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160643649 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 144889931
• Sequencing Scaffolds: 15
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F043235	Metagenome	156	N
F046432	Metagenome	151	Y
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063778	Metagenome	129	Y
F076191	Metagenome	118	N
F084362	Metagenome	112	N
F089056	Metagenome	109	N
F097526	Metagenome	104	Y
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115310_100001	All Organisms → cellular organisms → Bacteria	740687
Ga0115310_100005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	201582
Ga0115310_100048	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	98832
Ga0115310_100049	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	98455
Ga0115310_100052	All Organisms → cellular organisms → Bacteria	96855
Ga0115310_100235	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	45357
Ga0115310_100436	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	31328
Ga0115310_100461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	30072
Ga0115310_101019	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	17466
Ga0115310_101348	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	14245
Ga0115310_101456	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	13352
Ga0115310_102680	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8285
Ga0115310_104728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	5086
Ga0115310_114847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1641
Ga0115310_125185	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	954

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115310_100001	Ga0115310_100001679	F084362	MNCTFTVRWSDEKNKQHAKTYATESDARRAKKWLLEHGIRDVDIAVKINNKPAGSLKDGDKSSEAEQKGFWWQE*
Ga0115310_100005	Ga0115310_10000516	F043235	MDEVVPSDEGHLLIDLCDDDPRRLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0115310_100048	Ga0115310_10004817	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQFFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0115310_100049	Ga0115310_10004943	F055792	MEIASQALDSTSAVTHRILLLTTQLSESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGSVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0115310_100052	Ga0115310_10005288	F076191	MKIIAESPAEEALLWRIKALSDELVNQDNRCTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDDYYDNPTTYIRSAHHNQELKDVIHLLILAGGNEIPSNHYGILRDA*
Ga0115310_100235	Ga0115310_10023511	F101360	VSKETALRRAAIAAHIAKVASQEKKKALKELEEHMAPGDTSKPQIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTTQEEAIRDLISTGDISILEIESGDA*
Ga0115310_100235	Ga0115310_10023539	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESK*
Ga0115310_100436	Ga0115310_1004363	F089056	MNLLSFLLDVFKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0115310_100461	Ga0115310_10046113	F101359	MKKFLSKRSILVGALALVLGFIISSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGISENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQKQSFTDSYKETVK*
Ga0115310_100461	Ga0115310_10046123	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDKKMNKRVFRQIPELKKNGKLFEIMLQGEVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0115310_100461	Ga0115310_10046125	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPETQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNTTWDYITKQIIDIKYSKLYNHLNLEK*
Ga0115310_101019	Ga0115310_10101919	F061925	MSWEYSINLDSEESLSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0115310_101348	Ga0115310_10134817	F061927	MKNSIFILFAMLILGACSSDSAQKATEKIKNAYSDSLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIGSCIGE*
Ga0115310_101456	Ga0115310_1014567	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGTKKANKISFADITDGDKSKVVAIKVKYFDDEGVDKIFENNNNKILNTINSQHISYDSQSAEYSKPQLFLLYQSLKVDC*
Ga0115310_102680	Ga0115310_1026805	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0115310_104728	Ga0115310_1047288	F097526	MTTNDTKAITIYTQDDYRRLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHMGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHITTALGSEVQGKPQ*
Ga0115310_114847	Ga0115310_1148472	F063778	MPETISEEAKQELLQQLQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQELTTAREYLKLCTDQIEYAISNVKAIPLDPPPED*
Ga0115310_125185	Ga0115310_1251852	F058221	LKNQKEELKTEIKEIESVLSFENPRKTLGVLTNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI*
Ga0115310_131964	Ga0115310_1319642	F046432	MQMSESRLSDVISKYQMPEGRYSVEGEGSFGESEFFWVIKNQSTNQKYLLVNTYSHHGVEAELECYREGGFENLEAIPRRIEAYLG*