3300008421: Human stool microbial communities from NIH, USA - visit 1, subject 763961826 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008421
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053300 | Ga0115417
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763961826 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 102126364
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F052660	Metagenome	142	N
F062845	Metagenome	130	N
F073656	Metagenome	120	N
F088920	Metagenome	109	Y
F092227	Metagenome	107	N
F099269	Metagenome	103	N
F099451	Metagenome	103	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115417_100194	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	78539
Ga0115417_100628	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	28366
Ga0115417_101590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9313
Ga0115417_103795	All Organisms → cellular organisms → Bacteria	2865
Ga0115417_104691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2195
Ga0115417_104708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2188
Ga0115417_106046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1647
Ga0115417_107051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1417
Ga0115417_116020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	697
Ga0115417_116298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	687

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115417_100194	Ga0115417_10019458	F099451	MEIKNVGQLRKIIENLPDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLILEFDDVGVSDKVLCLGVTSNE*
Ga0115417_100628	Ga0115417_10062818	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANRGEIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEVDPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQTQGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH*
Ga0115417_101590	Ga0115417_1015901	F088920	ESARPHYYLAFGIGVILHLILHFSQKVAIFAPKRVILLLFVPTLFSACLAAFSLHTSPKISGQTSLYQPWLSPYCLFKD*
Ga0115417_103795	Ga0115417_1037953	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIVLPIPSHRAKSHDFACWWPVAAGHSRSADALPGKSNS*
Ga0115417_104691	Ga0115417_1046911	F026592	ASPQGIDAQASQGSVAPLTERSDETFSVKQFFSADRE*
Ga0115417_104708	Ga0115417_1047081	F062845	MEKTPFILHEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA*
Ga0115417_106046	Ga0115417_1060462	F099269	VQVGELLLFDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0115417_107051	Ga0115417_1070511	F088920	VSARPHYYLTFGAGLILHLILHFSQKAAIFAPKRAILLLFVPTLFFTGLSVLSPQTSSKISGQTSLHQPWLSPYYLFKD*
Ga0115417_111529	Ga0115417_1115291	F101356	DVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0115417_116020	Ga0115417_1160201	F026489	RAPRGTFLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGWAAPEKTEDSRLFGVKIF*
Ga0115417_116298	Ga0115417_1162982	F092227	MNEQKRKRILRVGCLILAGAFLLSVLGSVILMFLV*