3300008412: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008412
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053243 | Ga0115193
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 638754422 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 187536378
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F041827	Metagenome	159	Y
F047127	Metagenome	150	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F070224	Metagenome	123	N
F081456	Metagenome	114	N
F084362	Metagenome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115193_1000146	Not Available	46287
Ga0115193_1000160	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	43994
Ga0115193_1000430	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19306
Ga0115193_1001971	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6435
Ga0115193_1002266	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	5859
Ga0115193_1003779	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4210
Ga0115193_1005716	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3236
Ga0115193_1007752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2678
Ga0115193_1011261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2098
Ga0115193_1011356	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2084
Ga0115193_1031028	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1066
Ga0115193_1031599	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1053
Ga0115193_1032225	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1039
Ga0115193_1064884	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	635

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115193_1000146	Ga0115193_100014657	F084362	MNCTFTVRWSDEKNKPHAKTYATEPAAKKAKKWLLEHGIRNVDIAVKINNKPAGSLKDDKPPETEAEQKGFWWEK*
Ga0115193_1000160	Ga0115193_10001609	F070224	MKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGESIYLLASPLKSGHTPGSKIRTRDWVKVDYSDRNNIIVRKVGGSLIIENLFIYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYDHPEACIIH*
Ga0115193_1000430	Ga0115193_100043025	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIIFGAIGFATWLVWLTPISFMTKLVMTAIGFLLCAITVILYTISAE*
Ga0115193_1001971	Ga0115193_10019719	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPTPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTITNAKGHQSYDWVLKNVEWAADTIRYF*
Ga0115193_1002266	Ga0115193_10022667	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGAKKASKISFADITDGDKSKVVAIKVKYLDDDGVDKIFENNNNRILNTINSQHISFNSQTAEYSKPQLFLLYQSLKVDC*
Ga0115193_1003779	Ga0115193_10037792	F057446	MNSISFGKTTITSYPEYFEIVENKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0115193_1005716	Ga0115193_10057165	F061925	MSWEYSINLDSEESVSSVVTDLKICELFSSSTTDYIDWKNPESIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHSYFLTDCDTDEEVTLEHIFRSVI*
Ga0115193_1007752	Ga0115193_10077524	F063778	MPETISEGAKQQLLQQLQDALGLVKNADTSAQDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAIGNIEAIPLDPPPED*
Ga0115193_1011261	Ga0115193_10112612	F063778	MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQIEYAISNIEAIPLDPPPDD*
Ga0115193_1011356	Ga0115193_10113564	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYEGFYLQLASYNKEVGDFFEQEMGNSFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLKNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0115193_1031028	Ga0115193_10310281	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIINIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0115193_1031599	Ga0115193_10315991	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIRVNEYFSYFSSYKIFVSERIVLLWQSRAPPVFS*
Ga0115193_1032225	Ga0115193_10322252	F041827	MKHFLSILALGCLLLSCNRDLENNENNETPAPPKEKLVLLKQLSKGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISANRSY
Ga0115193_1064884	Ga0115193_10648842	F054111	MVFKNLGKENMNKPLNNITHEVFLKLIEHLKNLQEFTFLEYIMAPEADIFYFNFMEKIVKIKWDLDYGLSLETKSLSTSDKDLFLNILH