| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300008410 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111382 | Gp0136555 | Ga0115361 |
| Sample Name | Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC5T |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Shell Corporation |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 270318699 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 22 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 5 |
| Not Available | 6 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp. SB9B | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → environmental samples → uncultured Coleofasciculus sp. | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine cold seep biome → cold seep → marine sediment |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 27.4 | Long. (o) | -93.2 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004052 | Metagenome / Metatranscriptome | 455 | Y |
| F004928 | Metagenome / Metatranscriptome | 418 | Y |
| F005815 | Metagenome / Metatranscriptome | 389 | Y |
| F026445 | Metagenome / Metatranscriptome | 198 | Y |
| F033261 | Metagenome / Metatranscriptome | 178 | Y |
| F034978 | Metagenome | 173 | Y |
| F037736 | Metagenome / Metatranscriptome | 167 | Y |
| F039402 | Metagenome / Metatranscriptome | 164 | Y |
| F044014 | Metagenome | 155 | Y |
| F059476 | Metagenome / Metatranscriptome | 134 | Y |
| F064731 | Metagenome | 128 | Y |
| F074891 | Metagenome / Metatranscriptome | 119 | Y |
| F080062 | Metagenome / Metatranscriptome | 115 | Y |
| F081143 | Metagenome / Metatranscriptome | 114 | Y |
| F084253 | Metagenome | 112 | Y |
| F088919 | Metagenome | 109 | Y |
| F091298 | Metagenome / Metatranscriptome | 107 | Y |
| F092080 | Metagenome | 107 | Y |
| F092081 | Metagenome | 107 | Y |
| F101182 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0115361_10000067 | All Organisms → cellular organisms → Bacteria | 6589 | Open in IMG/M |
| Ga0115361_10004402 | Not Available | 1710 | Open in IMG/M |
| Ga0115361_10006155 | Not Available | 1874 | Open in IMG/M |
| Ga0115361_10006563 | Not Available | 1416 | Open in IMG/M |
| Ga0115361_10007860 | All Organisms → cellular organisms → Bacteria | 2390 | Open in IMG/M |
| Ga0115361_10009437 | Not Available | 1175 | Open in IMG/M |
| Ga0115361_10009802 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 2431 | Open in IMG/M |
| Ga0115361_10015134 | All Organisms → cellular organisms → Bacteria | 896 | Open in IMG/M |
| Ga0115361_10015956 | All Organisms → cellular organisms → Bacteria | 2360 | Open in IMG/M |
| Ga0115361_10016444 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1253 | Open in IMG/M |
| Ga0115361_10018580 | All Organisms → cellular organisms → Bacteria | 793 | Open in IMG/M |
| Ga0115361_10021737 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → Thermoanaerobaculales → Candidatus Sulfomarinibacteraceae → Candidatus Sulfomarinibacter | 721 | Open in IMG/M |
| Ga0115361_10027461 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 715 | Open in IMG/M |
| Ga0115361_10031194 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp. SB9B | 575 | Open in IMG/M |
| Ga0115361_10032255 | Not Available | 859 | Open in IMG/M |
| Ga0115361_10037861 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 686 | Open in IMG/M |
| Ga0115361_10089774 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 695 | Open in IMG/M |
| Ga0115361_10094529 | Not Available | 895 | Open in IMG/M |
| Ga0115361_10094834 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 504 | Open in IMG/M |
| Ga0115361_10097418 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont | 555 | Open in IMG/M |
| Ga0115361_10101438 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → environmental samples → uncultured Coleofasciculus sp. | 583 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0115361_10000067 | Ga0115361_100000676 | F091298 | MSSAARLRVTSPVQVLEHLSLGEPIQDTRVAGLLDLDPLVVSRWLCGEDLRGIYQPILLRHCALDGLDLEGRTFYEMVELVGCRVGVAHCTRAYFYSSLLIEDCVFEGDFEGRGIQSDGRMVIHNTVFTGWADFSTINLRGRVDLVDLSFPGGTNLLHVLVNDLHELLGGEIRLSGCQFRAADVPAGLEVARFGIKPLIEGSLGGAEG* |
| Ga0115361_10004402 | Ga0115361_100044022 | F039402 | MALVDYTDLEHDIAEAPEPKILSRGSEVKARIIAVRSGISDKNNCQWYQPVFDVPSEPMVIEFNTFFWDLADAKGKIDDKQFHRSLNTFKNFATAFGIDYSRPFSWEDDLIGLEGWVILGVKKDDEYGDSNTIKKYVVGR* |
| Ga0115361_10006155 | Ga0115361_100061553 | F044014 | MDTDYRPRFSFEISWEQKERADRLLAAYGLRRAIFGNILDDVLDIIEDYGGISIGVMMSGEVKPRSIIPTMQRAEETGGKLANVNS* |
| Ga0115361_10006563 | Ga0115361_100065631 | F034978 | LXXNATKDQIKELKSSILWADIINELNNWKEGFNAEMMSIVDTSADSNPSTASVLLHMGDLNGRQKAVDYMLGILDVFLSIQETNKTDEIDEIEEEEINNGK* |
| Ga0115361_10007860 | Ga0115361_100078603 | F101182 | MNSYEEGLQYERKMDRISEQIEELMLDAMITALTKIKDRNLFYSDVESRPQNDPYPF* |
| Ga0115361_10009437 | Ga0115361_100094372 | F092081 | MKPITRNLLITALAILIFTAVVTAGRLRADTGAPPQETAEPPASASQEPLPEFQPTERLPADSAVAFPTDI* |
| Ga0115361_10009802 | Ga0115361_100098022 | F026445 | MISVNETKQKRQNRTVTLYLGNTLAEYQEMISTEEGMQTLIQQVEIADSLNWGHLADGHHEGCPRCLRFTHHDGYARWTKHFDGTQELVTIIRVRCLDCEAVFTIQPSFVVRYKRYDTDAMEKFMVLLFITEDSYRMAGVSQALGMDTHQEGTWVALEKANRDAISPTSLWGLVQWLGQLSPAQLNLALGVEPPTHIIEDEKHMKECGEKVYVPIVYAPREALIWWIDYIDSVSEDALLNSLERFKAISERLAHIVGANVDGWDPAQKALREAFPGITLAECHLHAMIKLGQHLATFKRQRKAMGQPVSEQEETQIRAAFVRVLQAPTPTAYQKALDDLPNVFDNGPLASRKDSLVTKQALFQAWTTDANLAVVSTPLDQCMKFLNRKQDNMQTLHGPKSGLATVNAWAITRNCWRFLKGALRAGLSPLELAGANFLGIPWMQLVNXVLCAWSTLALAAGALTIST* |
| Ga0115361_10015134 | Ga0115361_100151341 | F092080 | VMVLICICIPYKGGKRMQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMNKLIESLTWGEEDNQRDAAKKRVLNVLVKEKPLGNWEDIHKERTGADADRS* |
| Ga0115361_10015956 | Ga0115361_100159561 | F033261 | VVDTVTLRAVVLHDPQGEKPAERWPVVILTDDREIDARALLNEYGDHWGHETAHRIGKHDLYLDILPPGYVLKTQRDDQRELQREVTFDQTAFFLSGWLRCLVFNLMTRFAEAMGGEYTRMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPVHPLTEPEKRNRLFGDG* |
| Ga0115361_10016444 | Ga0115361_100164441 | F005815 | PGTGKTRVKEFIMTMKVTHLTMYWTSDEAATVIDFLDRLRDALWETYGEQITEMHREACDNRIQDINQCELGFDDDIPF* |
| Ga0115361_10017151 | Ga0115361_100171512 | F088919 | FNNHRLSVKTQGFMQNARDYTVDIGILDPQPRRSLKICWSNLLIFVALCGAAWSFALTDLAPNSTLLPLILGTCAGLSLILTVYRSHDRLVFYSHYGRVPLVVLFNRSPDQVTLDLFADALEQHIKGAKTHYQCANETLSEELKAHRLLMDEGVISSKRYDIVKQRILSQHSSRCR* |
| Ga0115361_10018580 | Ga0115361_100185802 | F084253 | IFVLIKAAQGFAVRRTPVRRSRKPAENAEQGKKGHLWMDTRQRG* |
| Ga0115361_10021737 | Ga0115361_100217371 | F064731 | LYPVPFLDMPRSRLHSDGTWKDNKEVPMKSVFRLTLFACVLALVVPFAGAADFEPDTDGPWINVDVYDLADYGDATFLEYLGRGYVALLDAVKSEGLILDYGVMMKTTGNTNDGDVVVWWSVDSLANYEKAGKRMGELASEIHTGAEWQEIWSVLQDVRTIKSSNLYRAVLWNQPGE* |
| Ga0115361_10027461 | Ga0115361_100274611 | F005815 | MTMKVTHLATYWTIDEAATAIDFLDRLRDALWETYGEQITTMHREACDNRIQDINQCELGFDDDIPF* |
| Ga0115361_10031194 | Ga0115361_100311941 | F074891 | MSAVTHDVIVKRKPGKKRRKGLAALRKLRNAMARRKLEQMREEELLQEQIYDVFADTEDSK* |
| Ga0115361_10032255 | Ga0115361_100322552 | F101182 | MNSYEEDLEYERKVDRISEQIEELMLDAILTALKKIKERNLFYSCVESRPQNDPYPF* |
| Ga0115361_10037861 | Ga0115361_100378612 | F059476 | MAGQGNRQQSTRMVVTVVLLVLLALGFFAASFFVMTQS* |
| Ga0115361_10089774 | Ga0115361_100897741 | F080062 | VAIAWGLNTWRQNAAEHGLDAAHEGDRSAAERWVDRALRESKCQLHEARAYLSSSTTRQYVRRPDYVETFVEKLYAGGAPRIELCDSEALGFRFAHYLVVTLPDDPSKHERIIADAQSFVRRD |
| Ga0115361_10094529 | Ga0115361_100945291 | F004052 | LRTLTTIVFLALTALLFSCDQRNFVSDVDPKLGLECFESHRLTPGTQYEGIEKLTESVLTIRIMNGVDVVMLDCGLNPDGTLRSTGK* |
| Ga0115361_10094834 | Ga0115361_100948342 | F004928 | MREEITMGQALHSIESEPDHTVEIVVHITETLGQQRRGDLVAALEGNGGITTAEFCPLRYHLMLVRYDRXLYSSQDVLXRVXSQNVXAXLIGPV* |
| Ga0115361_10097418 | Ga0115361_100974181 | F037736 | VPYRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLIGAADANHIWWLNTNPLNSLLLHLNSYRIRHLPFGFLTAS* |
| Ga0115361_10101438 | Ga0115361_101014381 | F081143 | MLEPCEGRLCAVSRTERIANRVGRSSGHKTPRRTTNLDPKGRGDKSMSVKRGITEDVYVVALQRLSDMAKATLPEPQCPVSSVVRPDGWA |
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