3300008362: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160400887 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008362
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053223 | Ga0115107
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160400887 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 128921695
• Sequencing Scaffolds: 16
• Novel Protein Genes: 26
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F032313	Metagenome	180	N
F046433	Metagenome	151	N
F054110	Metagenome	140	N
F066860	Metagenome	126	N
F074985	Metagenome	119	N
F078842	Metagenome	116	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F081510	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092230	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F095633	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103431	Metagenome	101	N
F103433	Metagenome	101	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115107_100006	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	236647
Ga0115107_100009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria mucosa	180404
Ga0115107_100107	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56959
Ga0115107_100223	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	38708
Ga0115107_100279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	34230
Ga0115107_100437	All Organisms → cellular organisms → Bacteria	26568
Ga0115107_101220	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	13529
Ga0115107_101875	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	9999
Ga0115107_103649	All Organisms → cellular organisms → Bacteria	5699
Ga0115107_104032	Not Available	5190
Ga0115107_104138	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5086
Ga0115107_104348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	4854
Ga0115107_106958	Not Available	3100
Ga0115107_107764	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2768
Ga0115107_110917	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1949
Ga0115107_113793	All Organisms → Viruses → Predicted Viral	1539

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115107_100006	Ga0115107_100006115	F092232	MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFENIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPEAVAFDAHLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0115107_100006	Ga0115107_10000615	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVQNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYISDRDTYFGDISIMQNIQSDIGLVHKDDPHDPEKITGVDIKVLAVFYTDDKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIVDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIVTYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0115107_100006	Ga0115107_100006160	F099452	MDKTYTELLQETLSKIYKLKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLTDLRKTPWYKDWFTHSHENASLIDLSKFNFRSLERFEKEEYLKDVESYDFEAATTVDSYSLFDTLIEDNSVDLFKLAAENILINHGFFNNTDYNLYDIPDKYMEDTDVCLYMCLLNSDNMDFMDKKTFKSTELFYIVKNNICGTIFFTLFDRMNEDIRTRAR*
Ga0115107_100006	Ga0115107_100006199	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIGDANDSLLFITNIPRETKYSIEEVFNIITSNDKYSEILNNVLSSLNIDLDYHKLLLNAINSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILGLFMTICIINKDIDKLASLCTGYLAITKDELAVKDLMNESAMTAFKYMSDEDIHDVVDDINSRMVLSRYLNQM*
Ga0115107_100006	Ga0115107_10000640	F081455	MENFLAKEIGTLIGKHFGFVDNIDLDKDPIITSNNIIDIPPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPEEVKTELVSTPDNGEAKVNVVFPKNEHILGNYVDYESFNKIKESNTDKIVRAVRLLNYKMADQNAAMKFGQFVSEFNYECDPNKRLRYELIRHQGREKDLVVRLSTVINGTTKYYVDIYPDLNKIDIDHHLISSARK*
Ga0115107_100006	Ga0115107_10000641	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYKYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRIYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMRS*
Ga0115107_100006	Ga0115107_10000644	F099453	MNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNVVYTPKYPMAIAMGKLEYMLGKKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA*
Ga0115107_100006	Ga0115107_10000666	F092229	MNKEYRFKHIPEVVLRNVKFIRENNIDIGNGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLTDPQVNAVKSAEFTYDLLMAARSENFNPEMVRDIFLKYGLKTNSSRNLYTRMDNNLSLYYYMEDYLDEYVKNGKVTYGSQEYRTIKEFKYLPLMNVLTQLTSSNPSGYILNHKLELVKENK*
Ga0115107_100006	Ga0115107_10000692	F105379	MVIQFQLSQSDIESLLSISKLLKCDKILYDRNYINSIIGVGPERSYFQTTSYMIDLDPSINNLLVNSLDLKNLSKATDGADITKTNVPVFDWDTVYIKSCMNSLREYQVDSHIIAKDDNFHESNCYSELMAGSASTGACRINVDKYLIDIPKSAMPTLKSDHVEAIVYEVPNRNFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0115107_100006	Ga0115107_10000697	F095629	MEVFKMRELIICACLFGCFGVANAATPIEQPKEVKVVHNDDSVALHKKVYKLEQRVERLEKLLLEKEGK*
Ga0115107_100009	Ga0115107_10000916	F103431	MIDLDALIVGMLFFIQFFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0115107_100107	Ga0115107_10010736	F081510	MKLPNMKAIKSAAKHSYTVSKILAKKYAPVALVTTGLVGYGVAVYKGIQSGKKLEATKAKYEAKDEAGEEYTRLDVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTMVTEEHARYRLRAKEVLDEETFKKIDAPIETKKVEIDGKEVEVESIVPKEGDFYGRWFKYSRHYASDDPDYNEAWVKEVDNMLTQKINTQSGGGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYLEWDTHEVWNEDKQEHEPQIYVRWQTPRNLYSTTNLRDIIPGRKELA*
Ga0115107_100223	Ga0115107_10022348	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMYID*
Ga0115107_100279	Ga0115107_10027920	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIINRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
Ga0115107_100437	Ga0115107_10043710	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKKVSIFLAVLTAFLLALVVQKIRALFGGITASVFVVMLSFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLAPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYMLIGLWADYVVKRTVKYE*
Ga0115107_101220	Ga0115107_10122016	F046433	MIELPTSPDALSELNSVTPPDLTLQARDTSRNNPVTYVVDDGYMGTRTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLKVDNNPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQMRERISVFGAYNNPGAHKVSVLVMAASSNCIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0115107_101875	Ga0115107_10187513	F095633	MRNYENSTEVGRREGLTEGELRTMGTLAMEATEELKKTTVRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFIDLSRTRCVVDADRSHKSYEFTCPVLKKYPDGELYPIREAHVISAIDVNGSQEVDFKII*
Ga0115107_103649	Ga0115107_1036491	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAQDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLGCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCVIGGKGWLEMASSAQIRRMINSIELDIYEVNS*
Ga0115107_104032	Ga0115107_1040323	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYNEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0115107_104138	Ga0115107_1041381	F018385	MMADLVNSWLPYQELSIEKDRDPVTDDEIIYGNNVKHFTLTIYSPEGRISKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0115107_104348	Ga0115107_1043483	F092230	MVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYNNMAYGEGNVEVSDSTSTGEVQNTEEKEARDKVDDAINSMRHLFASAIMVNLRVVELYKILTVCMILIAIAMTVGYYSYLKPETVYEFYCKLRRKEKYPSDENLVKRIGFLVIILPPCMLFLLIV*
Ga0115107_106958	Ga0115107_1069581	F032313	MYRFLILLFALTLMACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0115107_106958	Ga0115107_1069582	F032313	MYRLLILLFAITLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGVDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK*
Ga0115107_107764	Ga0115107_1077643	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHVSKDHLTTIVRASFIVMSISLFICGLAMPDFSDTETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLLVVVTFGIAEDRE*
Ga0115107_110917	Ga0115107_1109171	F046433	VEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYYLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQVKERIAGFEAYNNPGAHKVSVLVMAASSKCIDNGIGADPLWGKATYPVEAYYRLKNDHDDWGMSRVTGIHSSTDRVFGCEVDDIAYCAIDGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0115107_113793	Ga0115107_1137932	F054110	VNYQPTIKKLLTALRMNGRRYVVDTRQSWSKYDKPCKIYIVSRMYNEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGE*