3300008361: Human stool microbial communities from NIH, USA - visit 1, subject 764325968 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008361
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053222 | Ga0115082
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764325968 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126719161
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium 8_1_57FAA	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F055775	Metagenome	138	N
F081354	Metagenome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115082_100526	Not Available	41097
Ga0115082_104632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium 8_1_57FAA	3867
Ga0115082_117617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes	756
Ga0115082_118856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	702

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115082_100526	Ga0115082_10052628	F055775	MAQIAQQDNLVIEVAKSTATLDGDTKKKLIECIKGGTITDVILVTKEAEKKISHARVVSWLVDTTGNSPKYKIDIINVNSGNVEGIALN*
Ga0115082_104632	Ga0115082_1046321	F026592	TASPQGIAALAAQGGVATLTERSDATFSVGQFSSADRE*
Ga0115082_117617	Ga0115082_1176171	F026592	QNRLRTASPQGIAALAAQGGVATLTERSDETFSVGQFSSADWE*
Ga0115082_118856	Ga0115082_1188561	F081354	SAHIFVKDFSSIFPKSGCRSPLKKGAATENPLEYGKTEVQILFEPLQATISSMELPKNFENKKLPNPFCFPS*