3300008341: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159247771 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008341
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053291 | Ga0115381
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159247771 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 88316881
• Sequencing Scaffolds: 6
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F051212	Metagenome	144	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F081454	Metagenome	114	N
F097490	Metagenome	104	N
F097526	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115381_100023	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	166390
Ga0115381_100241	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	38171
Ga0115381_103004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	4381
Ga0115381_116207	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	848
Ga0115381_122551	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella	608
Ga0115381_123062	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	593

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115381_100023	Ga0115381_100023100	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEFISFKGMALYSRQYTLNSLKKEFSAKPLMGQNEELSKEVSLPNTPKNWEAFTKKINLDKFKKLRDCPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0115381_100023	Ga0115381_100023102	F040685	MKKLLFKLFFALTFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGPSEQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKGIYE*
Ga0115381_100023	Ga0115381_100023103	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTDIQNNKTWDYITKQAIDIKYSKLYNHLNLKK*
Ga0115381_100023	Ga0115381_100023119	F081454	MKTFKFVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVKMKMNMNMGSTISTQKKQNNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKARSVITQQKIK*
Ga0115381_100023	Ga0115381_100023171	F097490	VFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSAMADHGLNHVTSEMIEGQMHYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0115381_100241	Ga0115381_10024127	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLCLSVSLVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0115381_103004	Ga0115381_1030045	F097526	MTTNDTKAITIYTQDDYRQLCERLDDDTVTALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSRLARQCEQNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHEQYKSGQLQRDLRHTAAASGLASTEAMQAAVPVSRQQDGRQSS*
Ga0115381_116207	Ga0115381_1162071	F042387	FEYQSDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVSGGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVITMVYEYNK*
Ga0115381_122551	Ga0115381_1225511	F058221	ESVLSFENPRKSFGVITNGVTEKYLGGMMDSSFAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI*
Ga0115381_123062	Ga0115381_1230622	F030786	MLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*