3300008337: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159490532 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008337
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053249 | Ga0115199
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159490532 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105827364
• Sequencing Scaffolds: 19
• Novel Protein Genes: 19
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F063777	Metagenome	129	N
F064819	Metagenome	128	N
F070224	Metagenome	123	N
F080165	Metagenome	115	N
F090516	Metagenome	108	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115199_100117	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43646
Ga0115199_100208	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	31419
Ga0115199_100288	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	26809
Ga0115199_100308	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	25536
Ga0115199_100633	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	16602
Ga0115199_100703	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	15599
Ga0115199_100801	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	14414
Ga0115199_100864	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	13704
Ga0115199_101047	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	11937
Ga0115199_101438	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	9750
Ga0115199_101667	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8810
Ga0115199_102896	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5740
Ga0115199_103266	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	5199
Ga0115199_103928	All Organisms → Viruses → Predicted Viral	4465
Ga0115199_104497	All Organisms → Viruses	4004
Ga0115199_104755	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3816
Ga0115199_109642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1903
Ga0115199_118265	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	999
Ga0115199_124964	Not Available	739

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115199_100117	Ga0115199_10011732	F049707	VVSEYRSPHNDGHDPYILIWEYGNDAKRVEFSERWATFGEDGWTIWHFRLVDGGVMSFSSREWEQRDDVNHLTTIHFQPKIQNNERN*
Ga0115199_100208	Ga0115199_10020810	F043990	MIKKLGIIFTFGVIILEIVVYANHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKIIILTYDQLDSSFTKLNKLPIKEDLPPNRIPKQFLNITNGYYKYVVDENDDWNFGILIVDTTRKEICIYNQIF*
Ga0115199_100288	Ga0115199_10028814	F063777	LKVLNIKISALPPENNSFCMKLILYLCIPFLLIFVILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPHENSQEYKIFDDFCAKSNEHLNDDDGYIFYKLTDKKSATDLNGAIISEFQEDIGNYILSQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEITISE*
Ga0115199_100308	Ga0115199_10030812	F061925	MSWEYSLNLDSEESASLVVMDLKFCKLFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI*
Ga0115199_100633	Ga0115199_1006337	F080165	MKNKKFLLTILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKHDPLLAWVHAPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0115199_100703	Ga0115199_1007031	F059076	HHHLPCCLSLRRENDEKNAEIMLSKFCQWQQLIQFIYSFFHFNFLLYLCHLKFTLMTHKILLLGLLLGGVSINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWIANFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGNNTPSVKHGPDNYGVTTAPATVLLQQHGANWAIYADYPNIGSYEFTSGSTAIGNLVNGTWVITLLVGKRDAVNFTELEFSQGGNNSGTGITNNTYKTGLENFLKKLE*
Ga0115199_100801	Ga0115199_1008019	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQEEADQIIKFLMNNR*
Ga0115199_100864	Ga0115199_10086411	F030786	MKRTKIHKVVFQMLVVMIVTSSLQLLLKNGYTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0115199_101047	Ga0115199_1010475	F097490	MNIFCKIILPLLCIISCSERKEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0115199_101438	Ga0115199_1014381	F059076	MTNKILLLGLLLGGISTNAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQ
Ga0115199_101667	Ga0115199_1016676	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0115199_102896	Ga0115199_1028963	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFERE*
Ga0115199_103266	Ga0115199_1032664	F054111	MNKPLESITHKEFLKLTERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLEIEALSTADRDLFLNILDKEILFLI*
Ga0115199_103928	Ga0115199_1039284	F043991	MSKKNPSAVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLDNGTEVSFYKGRNIIYADILFSKGIRTILFKCRQKKNLTRFISRVLELAQGEPSNIHPDFRA*
Ga0115199_104497	Ga0115199_1044976	F105377	VRDFDKLPLLTPEEAFERAWEEGGAARPVFDRGYQVRNLNDWKAIETLLRQNDVPDITIASFGLKRFEDILDALAMLHERGWRLWQTAANVYVGGERKTVQAIRAHYRGI*
Ga0115199_104755	Ga0115199_1047553	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVSYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEAMVEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK*
Ga0115199_109642	Ga0115199_1096421	F097526	MTTDNTTAIAPYTQDGYRQLCERLDDDTVAALLHAHIDAFAAKGNRVLLRRLTEGLRIAGEMEKACRVGDPTPAEQARRERWDSNYGRLQQHARMAGDQITNADNAAVSRLTAQCERNGRSDTELPVARDDAYGFAAALRDIPLTAPQINLLWRMALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVY
Ga0115199_118265	Ga0115199_1182652	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRDLKDLCECKIRKFFFQNIDEKIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKI*
Ga0115199_124964	Ga0115199_1249641	F070224	MKRLLFLLLTLLHCTAWSQVYNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMQEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVVEHDKKADRYYKYRIALVIYMDYDHPE