3300008335: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 508703490 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008335
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053240 | Ga0115190
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 508703490 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55546708
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F063777	Metagenome	129	N
F067847	Metagenome	125	N
F074985	Metagenome	119	N
F097525	Metagenome	104	N
F097527	Metagenome	104	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115190_100001	All Organisms → cellular organisms → Bacteria	871172
Ga0115190_100181	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	35049
Ga0115190_101083	All Organisms → Viruses	8524
Ga0115190_105503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1470
Ga0115190_106415	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1233
Ga0115190_106810	All Organisms → cellular organisms → Bacteria	1142
Ga0115190_107095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1086
Ga0115190_110789	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	702

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115190_100001	Ga0115190_100001873	F101358	MTEKHSASLPPRQEHLLTQPITTDGTPEKRTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVEDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0115190_100181	Ga0115190_10018123	F074985	MMELTDGGWYKTPRIIKGEDFLAHIHETYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSLEQFDQLWLDQTFQKLHPVIINHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0115190_100181	Ga0115190_10018124	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115190_100181	Ga0115190_10018138	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVKEDPKYKELDDKFKETELNNL*
Ga0115190_101083	Ga0115190_1010832	F105377	VRAEVRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKAIETLLRQYDAEDAVIASFGLKRFEEIFDALAMLSERGWNLWQTVANVYVGGELRAVPAIRAHYRGD*
Ga0115190_105503	Ga0115190_1055033	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFITIPAAGGEPARPCGPRVLRPAR
Ga0115190_106415	Ga0115190_1064151	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYEDKKRKIDGFSQEEAEQIIKFLMNN
Ga0115190_106810	Ga0115190_1068101	F097525	KIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVTSFKKV*
Ga0115190_107095	Ga0115190_1070952	F063777	MKVLNIKISALPPENNSFWMRLLLYLCVPFLFIFGILLLIGWRIYSGINSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPHENSQEYKIFDDFCAKSNEHLNDDDGYIFYKLTDKKSATDLNGAIISEFQEDIGNYILSQNLILEDNQLKNQLISFNKNTGK
Ga0115190_110789	Ga0115190_1107892	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQREAAKSLSKLI*