3300008330: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159268001 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008330
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053195 | Ga0114859
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159268001 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71662712
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F046431	Metagenome	151	Y
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F054110	Metagenome	140	N
F055792	Metagenome	138	N
F066860	Metagenome	126	N
F095629	Metagenome	105	N
F097527	Metagenome	104	N
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114859_1000353	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9611
Ga0114859_1000368	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9280
Ga0114859_1000464	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7921
Ga0114859_1000527	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7282
Ga0114859_1000674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6109
Ga0114859_1001044	All Organisms → Viruses → Predicted Viral	4535
Ga0114859_1002349	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2726
Ga0114859_1005248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1706
Ga0114859_1006757	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1474
Ga0114859_1014018	All Organisms → cellular organisms → Bacteria	945
Ga0114859_1016348	All Organisms → cellular organisms → Bacteria	855

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114859_1000353	Ga0114859_10003531	F099454	MALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQRKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQNNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK*
Ga0114859_1000368	Ga0114859_10003684	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFKGGRSMASNVLLPGSAH*
Ga0114859_1000464	Ga0114859_10004646	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQFFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0114859_1000527	Ga0114859_10005275	F055792	VEIAGEALDSTSAVTHRILLLTTQLGESLLAFLGAENGVIAEAMVSGALERDLAIDCALEEVRPVFVDESDDGAEAGTTWSRHPLETLQKESNILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGEAIESVALPDVTRLDESIALQGIGSLRDLLVTPDVSQADHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0114859_1000527	Ga0114859_10005276	F040149	VADEGAEELRWKVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPQLTPVWSHDSEDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114859_1000674	Ga0114859_10006744	F046431	MLTYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGASSFETIGLTDFSNNATDEEVKVLNIYPVNLTPPTTEVEYIPDVHVVYKDGRSETIPKSALLKVWMEGRNSN*
Ga0114859_1001044	Ga0114859_10010449	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
Ga0114859_1002349	Ga0114859_10023492	F047508	MLGHRLVEGRVKYPYLRRLGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDSVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0114859_1005248	Ga0114859_10052482	F046431	MQTLVMAAESELTLTPKLETNNIHLKWTGPQNSSYRVYQKKPGASSFETIGLTDFSNNAIDEEVKVLNIYPQESNTDGRLWPTLNSSQVANIAKVLPKVQITYLDGQTETIQKTALLKVWMEGRNSKGRR*
Ga0114859_1006757	Ga0114859_10067573	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLLVVVTFGIAEDRE*
Ga0114859_1014018	Ga0114859_10140181	F095629	MEVFKMRELIICACLFGCFGVANAAAPVEQPKEVKVVHNDDNVALHKKVYKLEQRIERLEKLLAEKEGK*
Ga0114859_1016348	Ga0114859_10163483	F097527	MIYFKMEKIGNKTYNKEKKTRSENLVFNTIPAAGGGTARPFGHPG