3300008328: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159611913 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008328
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053281 | Ga0115314
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159611913 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121969856
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006329	Metagenome / Metatranscriptome	376	Y
F018385	Metagenome	235	Y
F046432	Metagenome	151	Y
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F068942	Metagenome	124	N
F078842	Metagenome	116	N
F103432	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115314_1000948	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	13622
Ga0115314_1003603	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4609
Ga0115314_1012128	All Organisms → Viruses	1568
Ga0115314_1015540	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1275
Ga0115314_1018622	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1103
Ga0115314_1022486	Not Available	950
Ga0115314_1024733	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	881
Ga0115314_1024754	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Aegilops → Aegilops tauschii	880
Ga0115314_1031804	Not Available	724

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115314_1000948	Ga0115314_100094821	F078842	MIISSIYKIADNDGLIAHIYEHLLAQYVLKRLQDNEFFILSDIILSAKTYGDTCFMDAELYSSEAKTTYDKVLREFDKLVIPEDDILRAASECGIEMNRNIAEVDRSELSKKLHEVQISPWRKQIDMVYRKAHDESSVNTLFRASYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQRAFVRCSDNHKQVILNRSTLNAVLGGCIIGGKGWLEMADSARIRQMVNSIELDVYEINS*
Ga0115314_1003603	Ga0115314_10036032	F051211	MRVKKAIKVFEKIRDLPYGTSGSNEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKICRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRYLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS*
Ga0115314_1012128	Ga0115314_10121282	F105377	MRDFDKLPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNDWKAIETLLRQNDVPDITVASFGLKRFEEIFDVFATLSERGWHLWQTAANVYVGGERKTVQAIRAHYRGD*
Ga0115314_1015540	Ga0115314_10155401	F046432	MWEMTESELSEIISKYQMPEGRYLVEQEGSFGESEFFCVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKS*
Ga0115314_1018622	Ga0115314_10186222	F068942	MIRKILSLPTLALCFTLCTALFAGCGENNLGFVTEVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHDFSESDKDTAYYKDIVIYMTRNERERTTTLKLVAPPNRTQQPKQFKFSVSVTPPGLYIFKVRQPALPAKAQ*
Ga0115314_1022486	Ga0115314_10224861	F054109	MTGRPKSKKGVKVHTAFKIYPVDKARAQAMADKLDLTLSAYVNRAVLEKVVRDEESEA*
Ga0115314_1024733	Ga0115314_10247332	F018385	MMAEYNNQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDYLGCCRIACPRDGKILCFNWVHWTAYMFTHDGMNELVFMPGSSRKTISRLYYEEVK*
Ga0115314_1024754	Ga0115314_10247542	F006329	MILELHVADVVDDHKIKMDAMRLKIRKIRKYAIHTEAWYHYVVGSIVTLVAIMIAFVLALKCFT*
Ga0115314_1031804	Ga0115314_10318041	F103432	LLVLGGLLCITACQDDAEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHSLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVVGIDSKGKPRDLGNYSCPLLQGKRKNVNFRTTEGFRHEYFEAERIDTFSVKSNWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPL