3300008326: Human stool microbial communities from NIH, USA - visit 1, subject 158458797 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008326
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053270 | Ga0115311
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 158458797 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124919497
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F029444	Metagenome	188	Y
F052660	Metagenome	142	N
F076064	Metagenome	118	N
F082887	Metagenome / Metatranscriptome	113	Y
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115311_101253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	15558
Ga0115311_102711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	7911
Ga0115311_103987	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	5485
Ga0115311_108209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2660
Ga0115311_110106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2161
Ga0115311_128944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	699

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115311_101253	Ga0115311_10125314	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNETRRDPMPVLKLY*
Ga0115311_102711	Ga0115311_1027111	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPATAGHSRSADALPGKSNS*
Ga0115311_103987	Ga0115311_1039874	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDALPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0115311_108209	Ga0115311_1082093	F029444	MDVLGQLTGFELEDLMTWTVSNLQRPFREDFSLKKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF*
Ga0115311_110106	Ga0115311_1101062	F082887	MEKIKKIAKYATNILAIVSALVAGINAVEGITIPYAIQIVQIIAVVQGVIGTYLLGQKAIAEKEEK*
Ga0115311_128944	Ga0115311_1289442	F026592	SILCCLRTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*