3300008306: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764305738 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008306
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053234 | Ga0115184
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764305738 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90090399
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F032313	Metagenome	180	N
F067846	Metagenome	125	Y
F080164	Metagenome	115	N
F089055	Metagenome	109	Y
F089057	Metagenome	109	N
F103431	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115184_1000071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	36265
Ga0115184_1000416	All Organisms → cellular organisms → Bacteria	13067
Ga0115184_1003343	All Organisms → cellular organisms → Bacteria	3655
Ga0115184_1003696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Erysipelotrichia → Erysipelotrichales → Erysipelotrichaceae	3409
Ga0115184_1003984	All Organisms → Viruses → Predicted Viral	3225
Ga0115184_1006456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2204
Ga0115184_1014487	All Organisms → cellular organisms → Bacteria → Proteobacteria	1144
Ga0115184_1027886	Not Available	666
Ga0115184_1035094	Not Available	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115184_1000071	Ga0115184_10000716	F067846	MESQQAQWERKTFNDWDKQCSKEDDYNRAIEMEIEAIKEDIANNDSDALCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0115184_1000416	Ga0115184_10004162	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLAPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0115184_1003343	Ga0115184_10033434	F089055	LKVEKMSSTPECVTKTPEIEAREKLAAIFSDAEQRDNSKVNPELGKTAFDVANIPNNEAVYLCNQTLGSYGKSLDRINKNPLEVVQTIGTSLQHLR
Ga0115184_1003696	Ga0115184_10036962	F080164	MVGLTLCAAPQVTLRERANAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKFPLLPSLSGGILTVRVLVVGDTVAVPRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDKSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEYYESHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEMELEDGTKLSTSLQHYDEQTSILDHPDRS*
Ga0115184_1003984	Ga0115184_10039849	F067846	EAIKENISNCDDDVICSFREKMLDYCEVINAFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLDQLERDYRNGYILND*
Ga0115184_1006456	Ga0115184_10064561	F026592	SPQGIAALASQGSVAPLTEQSDATFSVGQFSSADRE*
Ga0115184_1014487	Ga0115184_10144871	F103431	MIDLDALVVGMLFFIQLFLQGITWRVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKNAESKEEGFHVCIPEG*
Ga0115184_1027886	Ga0115184_10278861	F089057	LIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLAKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKNLMNESATMAFQYMSEEDIHNVVDDINSRSVLARYLSRM*
Ga0115184_1035094	Ga0115184_10350941	F032313	EQEKHEVPVPKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK