3300008304: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160421117 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008304
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053226 | Ga0115174
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160421117 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131056970
• Sequencing Scaffolds: 9
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F063778	Metagenome	129	Y
F070224	Metagenome	123	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F097490	Metagenome	104	N
F097527	Metagenome	104	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115174_100155	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42589
Ga0115174_100321	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	28277
Ga0115174_101393	All Organisms → Viruses	10946
Ga0115174_108936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2750
Ga0115174_113069	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1966
Ga0115174_134868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	724
Ga0115174_135141	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	718
Ga0115174_136933	Not Available	679
Ga0115174_143912	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	561

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115174_100155	Ga0115174_10015546	F074985	MELTDGGWYKTPRIVKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYEVDTENAVLFTINKCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIINHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRIPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDDEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0115174_100155	Ga0115174_10015547	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLISNGSVLFLAEERKTYNAKEYYDYWTAREGRPAPFFYESQQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115174_100155	Ga0115174_10015548	F027205	VASRLIVSADDILKAVKESEEFERKALNEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIIDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK*
Ga0115174_100155	Ga0115174_10015555	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNYVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVT*
Ga0115174_100321	Ga0115174_10032136	F097490	SKFNPLIIKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTEKNYYLLSPVVSAMADHGLNHVTSEMIEGQMYYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0115174_101393	Ga0115174_1013935	F105377	VRNFDKLPLLTPEEALERAWEEGGSDHPVFDRGYRVRGLNSWKAVETLLQQNDVRDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRTVQAIRARYRVI*
Ga0115174_102910	Ga0115174_1029108	F043991	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGQYSDQMHFDLKNGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA*
Ga0115174_108936	Ga0115174_1089362	F063778	MPETISEGAKQQLLQQLQEALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQIEYAISSIKAIPLDPPPED*
Ga0115174_113069	Ga0115174_1130691	F063778	KQQLLQQLQNTLGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQTSINDAIDNIEAIPLDPPPDD*
Ga0115174_134868	Ga0115174_1348683	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGGGPARPC
Ga0115174_135141	Ga0115174_1351411	F042387	ETLANSAKMQLPTKVTIAEKTKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNGSEVLVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVSGGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSS
Ga0115174_136933	Ga0115174_1369332	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVATGAVYIPPISGEPIYLLASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIIMGFGDSLVIENLFIYYAAGFPGMKEYELYYKGTGEEITKEDFDSIKFSRMPTALREIKKYKLPRTRRSSGEVNRWQHLHLFVVEHDKKAGRYYKYRIALVI
Ga0115174_143912	Ga0115174_1439121	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIYKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*