3300008300: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 686765762 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008300
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053200 | Ga0114869
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 686765762 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55515316
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium reichenbachii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F064818	Metagenome	128	N
F067847	Metagenome	125	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F097525	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114869_100257	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10991
Ga0114869_100490	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7566
Ga0114869_103357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1992
Ga0114869_103901	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1802
Ga0114869_104315	All Organisms → cellular organisms → Bacteria	1687
Ga0114869_114500	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium reichenbachii	796
Ga0114869_121800	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	612

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114869_100257	Ga0114869_10025710	F067847	MFSHIVRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELNNL*
Ga0114869_100490	Ga0114869_1004908	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEDRKTYNAKEYFDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLENVEWAADMIRYF*
Ga0114869_100490	Ga0114869_1004909	F027205	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0114869_103357	Ga0114869_1033573	F064818	LIAFCRKVFKNKIQFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIKKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0114869_103901	Ga0114869_1039012	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLQYTFTRYILR*
Ga0114869_104315	Ga0114869_1043152	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVTSFKKQ*
Ga0114869_114500	Ga0114869_1145001	F081454	FVEGVPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNLDMTINLKLKTELLTLENTSKAKSIITQQKIK*
Ga0114869_121800	Ga0114869_1218002	F101359	IVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQDFTDSYKETVK*