3300008282: Human stool microbial communities from NIH, USA - visit 1, subject 159166850 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008282
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053086 | Ga0114156
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159166850 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151681049
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047755	Metagenome	149	Y
F051935	Metagenome	143	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F062845	Metagenome	130	N
F068941	Metagenome	124	N
F074898	Metagenome	119	N
F076064	Metagenome	118	N
F078003	Metagenome	117	N
F082714	Metagenome	113	N
F092227	Metagenome	107	N
F097493	Metagenome	104	Y
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114156_1000002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	427172
Ga0114156_1000113	Not Available	88220
Ga0114156_1000567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	35337
Ga0114156_1003912	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	5058
Ga0114156_1009357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	2226
Ga0114156_1010591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1993
Ga0114156_1010704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1977
Ga0114156_1012015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1782
Ga0114156_1019914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1122
Ga0114156_1020235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1106
Ga0114156_1022621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	998
Ga0114156_1035102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	666

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114156_1000002	Ga0114156_1000002117	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*
Ga0114156_1000113	Ga0114156_100011320	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSETVEAIALN*
Ga0114156_1000567	Ga0114156_10005672	F047755	MENKKVEYLINMINDMDIKDKLRLAICMSQSKWSGLIYNTNENYEKFDNMLKSIDEEYRTTFINFGKYKVVMFAMAKLMEMETTEQNKVALYLSNILVKKLGL*
Ga0114156_1000567	Ga0114156_10005676	F047755	MENKKVQYLINIINDMDLKDKLRLAICMSQSKWAGLIYNTKENYEKFDKILKEVDEEYRTTLINFSKYKLVMFAMAKIMEMTKEEQNQVALFYLMQ*
Ga0114156_1003315	Ga0114156_10033152	F101356	LDEKLQTDVGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFYVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDKSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
Ga0114156_1003912	Ga0114156_10039123	F076064	LKKTIPGRALDNLFYLQYDLPPEASFHATTEEAKRPDELYIRKLLPELTRLKLQPCHVVANDEAYYAAMKGISLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNEAKRPPKPALKFY*
Ga0114156_1009357	Ga0114156_10093574	F056682	MKMQSRAGKVANQPIGQSKTHSASFGAFPSKNRSTFPIQKLGKNYKNQEVL*
Ga0114156_1010591	Ga0114156_10105911	F074898	MEKCTVSFAACQDREAERTKRKQNKKKQCGTRNLSFSLTKRTKCCILYVAKAFVLYRKECFFMRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMMAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGRPVDAALLTTPLKLLDGRSPSEVLGLLAEDINKMLDAIPSLYNLPXXXXMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQTSEVARAYRSAMRGYLLSNFRLSGQIGIEKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQTGSNFSLRLDNENANVFALNANVFTLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQAGTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPEAIGTIELTQLLDVLF*
Ga0114156_1010704	Ga0114156_10107041	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGTEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVAALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPYTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ*
Ga0114156_1012015	Ga0114156_10120151	F051935	MKRLMGLLLAMMVMMGGISCAVAENANPLVSDWLTELKSKRLIQIVEDEIGEGWTLYQPNGREEEENFSSAENLKEMRFLPVVAQKDNQLRLLILRRQGDLWKVSEQNDRALMRDGWMLQNFSAMPYGNSDWTYIYFDFVDENQKRWNLMLNLGDGYVSSFGTISHYVEGYGTTYINMNYDRGLEFLIDAPAYSRFSYEVYPVERYSFGVEDFDLATCPLTMQEFLVPAIVTCGEEGAGLYIMVQQDVQPIVTLADGDAIEAIPQKWELDWTIVYYQGNYLFMKTENCKMEE*
Ga0114156_1019914	Ga0114156_10199141	F082714	RNARVGEKSGTRNADDEGRELVMVVGIRFAADAPVRTVLQAVLPIFSTADVDFLVREYWVCTFGNGLPERRFTAQEMRRALDALTPDEHAELFTIYVLPHNAPGTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSGEQLRAVIETLRKAVEIRSVEAVERKTLARWQF*
Ga0114156_1020235	Ga0114156_10202352	F092227	MNDKKRKRILRVGCLILACVFGLSLLGSLVMMLLV*
Ga0114156_1022621	Ga0114156_10226212	F097493	MKNGTAYFYEHGVEIDGTVYGIRTDRDTLRIKRSVVNDKFAETDDNFDMDTEIAKIQHTDVTFEQPTAEQLEQIQAKTYNSMSELKQHVQSVMNGDETMSQDEINAMLLLQIAELKAGVGGE*
Ga0114156_1035102	Ga0114156_10351022	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDGLSNTVPSKSCA*