3300008281: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160218816 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008281
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053059 | Ga0113996
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160218816 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149476067
• Sequencing Scaffolds: 13
• Novel Protein Genes: 18
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F033081	Metagenome	178	Y
F036281	Metagenome	170	N
F046431	Metagenome	151	Y
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F063778	Metagenome	129	Y
F074985	Metagenome	119	N
F077403	Metagenome	117	N
F095630	Metagenome	105	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113996_1000006	All Organisms → cellular organisms → Bacteria	281903
Ga0113996_1000154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	60533
Ga0113996_1000478	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	31661
Ga0113996_1001768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	12152
Ga0113996_1001813	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11907
Ga0113996_1002086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	10447
Ga0113996_1002663	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8391
Ga0113996_1003419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	6571
Ga0113996_1003695	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6107
Ga0113996_1004976	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	4541
Ga0113996_1005109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	4427
Ga0113996_1020874	Not Available	1137
Ga0113996_1022207	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1069

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113996_1000006	Ga0113996_100000670	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSAYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRIYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQLS*
Ga0113996_1000006	Ga0113996_100000697	F095630	MYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDKGLFISSDIILTAKTYGDTCYMDVELYNPAAPNAYNEALQVFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRRSYDKSSVNTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIIMQAVALNFLVAVRENYTVYDRGDQWSEASLSVGYRMFLGLAKEDKQITSQLKHEFTVYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI*
Ga0113996_1000154	Ga0113996_100015450	F101358	MTEKHSASPTAKEETLAPLPPRQPEHLLTQPITVDGAPEKRATHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHRLEKCVSLAVLQEQNLDFTNAYLQRAYGVMIKDGRLQPVADTTHATTSSQEQQTEILPAQGGDTYEHLGGDSARQLVGSVAAKASDGEVDNSLLAQRALERIR*
Ga0113996_1000478	Ga0113996_100047818	F033081	MAWLFNRVMPTDSRPAFVWPRLVVAIEDTRHFDRRELSFIAVVLIVMTIATIKVLLMIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGMTGAFLIGDFTNYTPSQKLLHKTKATRYEAYNTLLLFALMEEQAFRSGSEKWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIVATAAAATLHTLYNVIALSLIAAAAVLYMAISVIKML*
Ga0113996_1001768	Ga0113996_10017683	F046431	MKKISRISITIILILSIIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFSNNATDEEVKVLNIYPQESNADGRLWPTLNPSDVANIAKVLPKVQVTYLDGQTETIQKSALLKVWMEGRNSKRR*
Ga0113996_1001813	Ga0113996_10018134	F101360	VNKENALRRAAIAAHVAKVASQEKKKALNELMEVMAPGDRSYATVNGEQVGAISVTTATPAYQVTDEQALVRWLEWNKPDAIHRVPAPWFTAKAALDGFIKQTGEIPDGVELVTPTPRISARVSPAQEEVIRELIAIGDISLIEIEGAE*
Ga0113996_1002086	Ga0113996_10020869	F063778	MPETISEEAQQELLRQLQDALGLVKNADTSALDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAISNIEAIPLDPPPDD*
Ga0113996_1002663	Ga0113996_10026631	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTCASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQKAWKAIHMGSTKRLNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0113996_1002663	Ga0113996_10026632	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEEQKTYSAKEYYDYWAAREGRPAPFFYEARQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0113996_1002663	Ga0113996_10026633	F027205	VASRLIVTADDIMRAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK*
Ga0113996_1002663	Ga0113996_10026639	F018385	MMAEYENQWGPYKEHSIENDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTYDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0113996_1003419	Ga0113996_10034198	F063778	MPETISEGAQQQLLQQLQDALGLVAEADTSAHDVAAITHSAADGHQLTELMLQELTTAREYLKSCADQIEHAISNVKAIPLDPPPDD*
Ga0113996_1003695	Ga0113996_10036951	F022002	ALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0113996_1004976	Ga0113996_10049764	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEERSLTHYVPRWATFTLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGVSNWSERAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGQVRGDSIWIEM*
Ga0113996_1005109	Ga0113996_10051096	F097526	MATTIYTQDDYCRLCERLDDDTVAALLHAHIRAFAADGNWQLLKRLTEAMRIAAEFEQACRNENPDPAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTAQCERNGRCDTDTELSVARDGAYGFAAALRDIPLNEKQTVLLWRMAVLTIAEITDATPSLVAHYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE*
Ga0113996_1020874	Ga0113996_10208742	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPIDRTISGFTLGVTTPAEARAIIQRQGGKIILEVGIHAGSKDVSYTVTGLNYARCPTQTVYMFFYKGHLQSIFFSFDGWDVLEQIESELENKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHSMSKNAYIAYTDKELDRARSAEKENEN*
Ga0113996_1022207	Ga0113996_10222073	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAECEPDTGWTVWYFRLEGGEVMKFRALEWEQKDDVNHLTTIWMRPSLHDIERKEN*
Ga0113996_1026004	Ga0113996_10260042	F077403	VGHAEEGISVRFEVHWHREHNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDASRPEKYNLTYYVPRWATYPLKGAGHSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGGWQFLLPDWEASGRLRDER