3300008260: Human stool microbial communities from NIH, USA - visit 1, subject 159551223 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008260
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053144 | Ga0114292
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159551223 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180331707
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042910	Metagenome	157	N
F043945	Metagenome	155	N
F047126	Metagenome	150	N
F050793	Metagenome	145	N
F055775	Metagenome	138	N
F058154	Metagenome	135	N
F059982	Metagenome	133	N
F067720	Metagenome	125	Y
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F088914	Metagenome	109	N
F099269	Metagenome	103	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114292_100531	All Organisms → cellular organisms → Bacteria	33675
Ga0114292_101004	All Organisms → cellular organisms → Bacteria	22075
Ga0114292_102114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13055
Ga0114292_102146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	12889
Ga0114292_103223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9294
Ga0114292_105361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5919
Ga0114292_106206	All Organisms → cellular organisms → Bacteria	5171
Ga0114292_106389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5026
Ga0114292_108030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4023
Ga0114292_109133	Not Available	3544
Ga0114292_110582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3077
Ga0114292_124766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1244

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114292_100531	Ga0114292_10053122	F055775	MAQIAQQDNLVIEVTTTADALDGDTKKKLIECIEGRTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINASSGAVVTIALN*
Ga0114292_101004	Ga0114292_10100425	F050793	MRKQVLVPENVEMADIHAIQTRVKKHNLLTVVLLIPLFAGCALRESHETLGGIVFVLSMVLMVLGFVSGRGDEKRLPAYWAKYQQIHRMDNLLRANLVGVWLCAEARVAVYREGSGYRVQLGVLDEKTGAWENDEQDEVFPTLADVREYATQEGYEPMAVDFETMTDEEFQQFLDRSRI*
Ga0114292_102114	Ga0114292_1021144	F059982	MTMRRMTRLLCLMLLFSLITFSCPLAEGTDAPTGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMAEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFGDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENASMDGAAVYVKEEATETASPEV*
Ga0114292_102146	Ga0114292_1021464	F099269	MQKEASAAMRKPPFFVHGVLLSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0114292_103223	Ga0114292_1032238	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMMCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGTAIRQVMFRMVDYALPAYAVATLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES*
Ga0114292_105361	Ga0114292_1053612	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSPFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK*
Ga0114292_106206	Ga0114292_1062065	F043945	MAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE*
Ga0114292_106389	Ga0114292_1063893	F042910	MLQLPQGGGLPGVHSHNGGLHLLRRQREQLSLRVRFLIEEYDIATRHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITALTISAAGKISFQGLTIAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC*
Ga0114292_108030	Ga0114292_1080306	F068855	VPTVEAQGPQVRKSLAPQGLQAEKESEDVNVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW*
Ga0114292_109133	Ga0114292_1091338	F067720	MASTTYRHLGDVTGMFAAQEQFRDITKMVCARFRGLTKTYHLGNVNKLVTFCHRFAVIGNMVRNAGQLPQPFWLGAACGGGSRGLFARA
Ga0114292_110582	Ga0114292_1105824	F074899	MRGRKQWNKQAVTSSFLDKKPPKSLVQQGLEGSTAVGKDEVGSSNLPSSSNINRLNRLI*
Ga0114292_124766	Ga0114292_1247665	F047126	TNIPQTQAEFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPLPPFAQRFIACFCSQTAAASQRKSAYILSSLESPCILCSLLRYFHILLKKLQKTC*
Ga0114292_132556	Ga0114292_1325562	F101356	VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYMYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*