3300008154: Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763961826 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008154
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053167 | Ga0114321
• Sample Name: Human palatine tonsils microbial communities from NIH, USA - visit 2, subject 763961826 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 146249299
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Palatine Tonsils → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F046432	Metagenome	151	Y
F047127	Metagenome	150	N
F053092	Metagenome	141	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F076191	Metagenome	118	N
F097527	Metagenome	104	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114321_1003198	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6277
Ga0114321_1005664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3728
Ga0114321_1026435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	946
Ga0114321_1033599	Not Available	776
Ga0114321_1045688	Not Available	601
Ga0114321_1046203	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	596
Ga0114321_1050787	Not Available	549
Ga0114321_1051138	Not Available	546
Ga0114321_1055852	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114321_1003198	Ga0114321_10031987	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASRLTKPIVSNSNGIVKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEASTQIEI
Ga0114321_1005664	Ga0114321_10056641	F097527	MIYFKMEKIGNSTLNKEKKTRSENLVFNTIPAAGGEPARP
Ga0114321_1026435	Ga0114321_10264353	F046432	MWEMTESELSEIISKYQLPMDDYLVEVGGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRRIETLELASDAEDEISKYLFGMYSIFEIK
Ga0114321_1033599	Ga0114321_10335992	F032313	PKPKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKNAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEEK*
Ga0114321_1045688	Ga0114321_10456881	F053092	MQSDQGLILCLTHALLVLGALILEPAEREDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSI
Ga0114321_1046203	Ga0114321_10462031	F047127	FAFILLSIISLVKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0114321_1050787	Ga0114321_10507871	F105378	KNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPIPIQDHLENNQIGYDSANSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNETGQLIIPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYP
Ga0114321_1051138	Ga0114321_10511382	F076191	MKIIAENPAEEALLWRIKAMSDELVNQDNRSTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPSNYYGFLRDA*
Ga0114321_1055852	Ga0114321_10558521	F067847	MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVK