3300008152: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160582958 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008152
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053139 | Ga0114285
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160582958 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 217475209
• Sequencing Scaffolds: 22
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella columbina	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F071327	Metagenome	122	N
F071329	Metagenome	122	N
F080165	Metagenome	115	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F097525	Metagenome	104	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114285_1000219	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43603
Ga0114285_1000352	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	31875
Ga0114285_1000995	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	16548
Ga0114285_1002419	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	9386
Ga0114285_1002778	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella columbina	8546
Ga0114285_1003123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	7843
Ga0114285_1003223	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7634
Ga0114285_1004506	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6007
Ga0114285_1004896	Not Available	5613
Ga0114285_1006069	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4766
Ga0114285_1006174	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	4714
Ga0114285_1006524	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	4514
Ga0114285_1006911	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4320
Ga0114285_1007684	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	3964
Ga0114285_1012463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2685
Ga0114285_1013047	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2592
Ga0114285_1034650	All Organisms → Viruses	1180
Ga0114285_1036286	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1136
Ga0114285_1038916	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1072
Ga0114285_1047917	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	902
Ga0114285_1082201	Not Available	568
Ga0114285_1091665	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114285_1000219	Ga0114285_100021933	F043991	MSKRNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNIKPSWIGKYSQQMHFDLTDGTEVSFYKGRNVIYADILFSGGIRTILFKCRQKKNLTRFISRVLELSQGDPSNIHPDFRA*
Ga0114285_1000352	Ga0114285_10003525	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWIVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKKN*
Ga0114285_1000995	Ga0114285_10009952	F059076	MTNRILLLGLLLGGASINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE*
Ga0114285_1002419	Ga0114285_10024192	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHFNDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*
Ga0114285_1002778	Ga0114285_10027788	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0114285_1003123	Ga0114285_10031232	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEEDSLKYTFTRYILR*
Ga0114285_1003223	Ga0114285_10032235	F030786	MLVVMIVTSSLQLLLKNGSATKGGNAMGTKKANKISFADITDGDKSKVVAIKVKYFDDEGVDKIFENNNNKILNTINSQHISYDSQSAEYSKPQLFLLYQSLKVDC*
Ga0114285_1004506	Ga0114285_10045061	F043990	LELSLLGIVVYANHKIEKSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEGLPPNGIPKQFLNTTNGYYKYVVDENDDRNFDILIVDTTQKEICIYYQIL*
Ga0114285_1004896	Ga0114285_10048966	F084362	MNCTFTVRWSDENNKPHAKTYATEADARKAKQWLLERGVRDVDIAVRVNNKSAGGLQNDEKKSESTAEQKGFWWQE*
Ga0114285_1006069	Ga0114285_10060694	F042387	MKRIILFFMAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGEKVVFVYEKDFITSKIKYSQAGEELGKTNYQYSNGKLSSVIDEAVISDSGIQYKRVVTREYHYNGSEVSMNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHDISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSALATEFCSLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKSNFPIKMKLNIDNQTITTMVYEYNK*
Ga0114285_1006174	Ga0114285_10061745	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0114285_1006524	Ga0114285_10065244	F054111	MNKSLESITHEEFLKLMERLKNLQGFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTSDRDLFLNILDKEILFLI*
Ga0114285_1006911	Ga0114285_10069112	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGEKRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEIMLQGEVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK*
Ga0114285_1007684	Ga0114285_10076842	F097525	MQQKKIMFKIQNAHQKIIFSIHGHRKRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQILANQETPAEIGFIEPELAFEYKNKKLIVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKKE*
Ga0114285_1012463	Ga0114285_10124632	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLESNQILTLKVLIIALAAALLFEYAYPWRIIFG*
Ga0114285_1013047	Ga0114285_10130472	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLNKFKKLRDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0114285_1013047	Ga0114285_10130474	F040685	MKKLLFKLFFALALAFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDRFKKLRDGPSEQPVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0114285_1013047	Ga0114285_10130475	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPETQKTSISEKQNAEKIERIIYSQTGGDTGGKGVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNTTWDYITKQIIDIKYSQLNNHLNLEK*
Ga0114285_1034650	Ga0114285_10346502	F105377	VRDFNELPLLTPEEAFERAREMGWNRPLFDLDYRVRGPVDWKTLETLLRQYDVEDAVMASFGLKSFEEILDVISMLHERGWHLWQTSAKVYVGGELKAVQAIRARYPGD*
Ga0114285_1036286	Ga0114285_10362861	F061927	ILLNLFLNYITMKNSIFILFAMLILGACSSDSAQKATEKIKNAYSDSLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDDIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0114285_1038916	Ga0114285_10389161	F089056	QKFLIIRQKESVSIYLTMNLLSFLLDVFKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0114285_1047917	Ga0114285_10479172	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKRLYLSASLVFIVIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0114285_1082201	Ga0114285_10822011	F085821	TFLVYDFFVAGNMPAVQLCIDYVVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0114285_1091665	Ga0114285_10916651	F071329	SASETKGNMRPLYSKGNLMLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*