3300008145: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008145
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053163 | Ga0114317
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160704339 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 41422320
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078842	Metagenome	116	N
F089055	Metagenome	109	Y
F095633	Metagenome	105	N
F103433	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114317_100129	Not Available	27959
Ga0114317_100153	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	23979
Ga0114317_100212	All Organisms → cellular organisms → Bacteria	20268
Ga0114317_101603	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4123
Ga0114317_105985	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1158
Ga0114317_108062	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	852

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114317_100129	Ga0114317_10012921	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE*
Ga0114317_100153	Ga0114317_10015321	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKSLQDNGFFVLSDIILSAKTYGDTCFMDAELYSPEVKKTYDEALRKFDKLIIPEDDILRAASECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKTHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPIDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEVSISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIRQMINSIELDVYEVNL*
Ga0114317_100212	Ga0114317_1002129	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAAGSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGRITASVFVVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELIHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFMSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQIVNLDNMANNNGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTIFGYLIILSSRKIISKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYMPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0114317_101603	Ga0114317_1016035	F089055	LKVEKMNSTPKCVTETLELEAAREEIADILSDAEQRDNYKVNPELGKTAFDVANIPDNEAVDLCNQALGSYGKSLDRINGNPLKIVREIGDLLQSFREDKTKGSCK*
Ga0114317_105985	Ga0114317_1059852	F095633	MGNYENFTEVGRGEGLTEGELRTMGALAMKATEELKKTTIRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIAKAFLDDRGEMSVEENFVPEDVFIDLSRTRCDAEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN*
Ga0114317_108062	Ga0114317_1080621	F078842	LQDNGFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDKALREFDKLVISEDDILRAASECGIEMNRDIVEVDRSELSKKLREVQISSWRKQIDMAYRKAHDESSVNTLFHTSYVRYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRDDQWSEASISVGYRMFLGLLKKDDKIINQLGYDFLEYVKSLSSSVFCDNLQKALVRCSDNHKQVILNRSTLNAILGGCIIGGKGWLEMADSARIGQMVNSIELDIYEVNS