3300008101: Human stool microbial communities from NIH, USA - visit 2, subject 159227541 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008101
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053068 | Ga0114024
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159227541 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 183054793
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026592	Metagenome / Metatranscriptome	197	Y
F039198	Metagenome	164	Y
F042095	Metagenome	159	N
F047126	Metagenome	150	N
F047755	Metagenome	149	Y
F051210	Metagenome / Metatranscriptome	144	Y
F056682	Metagenome	137	Y
F072445	Metagenome / Metatranscriptome	121	Y
F078004	Metagenome	117	N
F088921	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114024_100026	Not Available	245563
Ga0114024_100082	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	157276
Ga0114024_100204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	103622
Ga0114024_100536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	57314
Ga0114024_105300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	4698
Ga0114024_117347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1113
Ga0114024_117524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1100
Ga0114024_117965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1073
Ga0114024_126066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	733

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114024_100026	Ga0114024_100026109	F072445	MASVASLVRGSDGYMNFIDYQSTYKDDNKEFLRGDMWEFTLINPPKIVYYPGDKIFKARLNQVNLGIDTSVSGFEKRMRGNYVIFQRTGQMTSGQITLQFTDKEDQAITYFVDDWRQKIADRDTKYSFRKDDLVADAQLVITNSSRIKVRTLNFYNCIIRDAGIDENGTAEDGTDRAEVPLTLDFEHYERRCLRISHELLGRIIISISRMANKVIFNDYVCELGN*
Ga0114024_100026	Ga0114024_10002688	F051210	MNTSYLRLMQTPEMLDALVNSSVSVDDANSRSREYGKMFSRNEELRDMFGLGNRQNLLQKTFSGYAETPLLSTQYFNASVASFCSSFAGFMSVERDFEQPTGLFYWFDVLGVTDMREVIPNLGPDSYQDIQSMGGFTLEVTPTATAAYSSLIGRKIIPSSLRVKIVTETEKFELIDNGQGQFMSIAGKLKSSSINYLNGRVEFELATALAGDVSKEKITIVGKEDVTGTPCNTVGASNAHANDKRFIAKMQQIGLTTVPDMLVAEYNIASLGALKKAINADMATFLFTKLRELYTKMINYKLVATLEEGYTGNTMADLNLSQDNLTGKFYDYRSRIDLFDSYLINVESALATKAVKGVTTTAYLAGNAAANQFQKGGMIGKWEKNTKMTYINDLLGWYNGIPVLRSTDVNEAAGEGTFYAIHKTADGQMAPLARGIYMPLTDTPTIGNYANPTQMAAGIYYQEGTRYMAPELVQKVTFKLGF*
Ga0114024_100082	Ga0114024_100082184	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNPYNTFVEFRSRKPGIANVDWGDGIKEQFPMTKVQGENNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVNDGIPVDRLSRSKKLIYINLQNMGQRMTVIPEAIISKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKKLNITPAPSDMWNYFDINTLPFFEVDKINPNITDFYFLSNWMNGERRTGWNDDNMSGRGLEHLTCFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDAIHPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0114024_100204	Ga0114024_10020455	F013656	MKKIYKEAIKSEIETNINVLYSENKIVIYTNKVSLQKQLNKLIGEPTKEYKIKRSIAGSLWEIPLEDKTRIQKLIVKANIFEL*
Ga0114024_100536	Ga0114024_10053657	F047755	MESEKVKHLIDMINEMDIKDKLRLAICMSQSQWYGLIYNTKENYEKFDTMLKEVDEEYRTTLINFGQNKYFNINFVMAKLMEMEQADRNKIALYLFNSIKNQ*
Ga0114024_105300	Ga0114024_1053002	F056682	MKMQSRAGKVANQSIRQGEIYSASFGTFPSKNRSTFPIQELRKNREDQEVL*
Ga0114024_111862	Ga0114024_1118622	F078004	VFFTRLNRIPRSFPDVNPVSDIFYFLFYSGIYVPAVSRRIRLPALLSAVSEHLSSRNTDLLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKALTAGAVTVTGVLAAHHDVTLAAQTILIIGTIFHNTF*
Ga0114024_117347	Ga0114024_1173472	F039198	EIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC*
Ga0114024_117524	Ga0114024_1175241	F088921	GKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRYKMWSK*
Ga0114024_117965	Ga0114024_1179653	F026592	GPEGMAALAAQGGVATLTERSDATFSVEQFSSADRE*
Ga0114024_126066	Ga0114024_1260661	F047126	MTNILQTQAGFKSKSLGSLCGFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLLYFHI