3300008089: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764285508 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008089
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052748 | Ga0104978
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764285508 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 163316767
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria	4
unclassified Campylobacter → Campylobacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F043235	Metagenome	156	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F064819	Metagenome	128	N
F071327	Metagenome	122	N
F081454	Metagenome	114	N
F085821	Metagenome	111	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104978_1000165	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43271
Ga0104978_1000525	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	24357
Ga0104978_1000620	All Organisms → cellular organisms → Bacteria	22056
Ga0104978_1002668	All Organisms → cellular organisms → Bacteria	8341
Ga0104978_1004873	All Organisms → cellular organisms → Bacteria	5286
Ga0104978_1007588	unclassified Campylobacter → Campylobacter sp.	3691
Ga0104978_1009585	All Organisms → cellular organisms → Bacteria	3030
Ga0104978_1009612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	3026
Ga0104978_1011036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → Cardiobacterium valvarum → Cardiobacterium valvarum F0432	2691
Ga0104978_1013259	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2292
Ga0104978_1016295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae	1905
Ga0104978_1016496	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1882
Ga0104978_1023840	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1331
Ga0104978_1027324	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1164
Ga0104978_1027944	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1139
Ga0104978_1028463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1118
Ga0104978_1034370	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	924
Ga0104978_1053579	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	582

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104978_1000165	Ga0104978_100016515	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSVKIPSTN*
Ga0104978_1000165	Ga0104978_100016536	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKTS*
Ga0104978_1000525	Ga0104978_100052516	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQSDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHNLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTESQQELVAEIQSHIALLKDLYKKVNKIK*
Ga0104978_1000620	Ga0104978_100062026	F095630	MHYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDKGFFISSDIILTAKTYGDTCYMDAELHNPAAPNVYNEALRAFDKHAIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRRSYDKSSVDTLFCVPYLKYGKKSNKLFSECVLEYSVDEEYINSPIDQALAVIVMQTVALNFLVAVRENYTVYDRGDQWSEASLSVGYRIFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALLRCSRNLEQVLLGRGTLNNILGGCVIGGRGWLEMADDARIKQMIATIQLDVYDI*
Ga0104978_1002668	Ga0104978_10026688	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWKDLPIPEHILNLRRQRHERHVILRVFIDGSTYNIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNSKEFYTEIDKWLADTRAHQSS*
Ga0104978_1004873	Ga0104978_10048738	F018385	MMAENVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKGAK*
Ga0104978_1007588	Ga0104978_10075886	F085821	MNNVFEQLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLIAQGYPTAENKKKFLNWIFMEPVYYLKYFISDASIQKKLHHDLLNLWYESGKRQILEQDKGKHDEAYINAWNEASVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNICLLDEYCRALLYTAETTQSQQELVAQTQNHIALLKDLYKKVNKIK*
Ga0104978_1009585	Ga0104978_10095852	F030786	MKRTKIHKVVFQMLVVMIVTSSLQLLLKNGSAIKGGNTMGTKKISLADITEGDDSTEGVLKVKYFDDDGADKIFENNNNKILNTINSQHISYNSQSAEYSKPQLFLLYRSLKVDC*
Ga0104978_1009612	Ga0104978_10096124	F097526	MTADNATAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQLLKRLTDAMRIAAEFEQACRNEHSDLAEQARRARWDNQFRELQQQARMAHCEIVNADNAAVSHLTRQCEKNGSRDTAIPSPHDDGYGFTAGLRDFPLNASQTALLWRMAVLTIAEMTDTAPPLVASYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLLSAAKAYENRNTDNRLEDAMTKP*
Ga0104978_1011036	Ga0104978_10110362	F097526	MTENSTMATTIYTQDDYCRLCERLDDDTVAALLHAHIDAFAADGNRQLLKRLTEAMRIAAEFEQADRSEHPDPAELERRERWDSHCKRLQQHARMAGDQITNADNAAVSRLTAQCERNGRSDTELPVARDDAYGFAAALRDIPLTAPQINLLWCMAVLTVAEMTDTTPSLAACYLNGTAGEHLGRALVEKTVYPVTVVSQFAWLLHEQHKSGQLQRDLSHTAKTFGLKDGN*
Ga0104978_1013259	Ga0104978_10132592	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTGFFSMMLLYIQGILGVFLGVYSPEFSEASGFSLFFKLFEYGIIILTCAGMITYVYTYLKKHQKLNLKIVIIALAAALLFEYAYPWRLIFG*
Ga0104978_1016295	Ga0104978_10162952	F103431	MIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*
Ga0104978_1016496	Ga0104978_10164962	F040685	MKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSRYTLNSLKKEFSAKPLMGQKEELPKEISLSNTPKNWEAFTKKINLNKFKKLREGPSEQAVDGQDEVIIIKTDKKTYRKMNASGNDHDRETWYDLLQIIAKEFGKKGVYE*
Ga0104978_1016496	Ga0104978_10164963	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNTEKIERIIYSQTGGDTGGKDVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQANKTWDHITKQVMDIKYSQLNNHLNLKK*
Ga0104978_1023840	Ga0104978_10238402	F040149	VADEGAKEFRWKVLIREQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIDYFIYDASVPKGHALTAVRE*
Ga0104978_1027324	Ga0104978_10273241	F081454	MKAFKLVLLLFITSASLVFGQEKRYFFKYEYYPNSEYLIKYKTHTDGGYKFVGSKEVLDKIGMDGMKMTMNSDIESAIATQKKQGNNVPFILEYTKYFYEAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNINEDIKKILIESIKQFAEMNTQFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNFKNMDLSA
Ga0104978_1027944	Ga0104978_10279441	F043235	VDEFGTQLTDALLDRPDRSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKIQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0104978_1028463	Ga0104978_10284632	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALIATELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0104978_1034370	Ga0104978_10343701	F051213	MKVSKLLWAVVMALTFVLISCDRVTDEPTIEGEMKKLFDSQAQRKSFRVLTASGKPYNHKVDWHIVGIMVPSSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRSVYFSTRNSDRQITLPDMRVTQRAE*
Ga0104978_1053579	Ga0104978_10535791	F064819	LNKEEPVFIKMKVRISTETMVSEDNLDIERSDLEDLTRNLKDLCEYKIRKFFFQNIDETIEIVFRINDIGTITVEGKMYDEIYMNSINFSFLTDLNGIVTFSKEISQEIAKCK*