3300008078: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159632143 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008078
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052884 | Ga0105955
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159632143 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105642860
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F063778	Metagenome	129	Y
F084362	Metagenome	112	N
F090516	Metagenome	108	N
F092231	Metagenome	107	Y
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105955_101656	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8630
Ga0105955_106929	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3094
Ga0105955_107060	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3050
Ga0105955_108427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces timonensis	2619
Ga0105955_112004	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1919
Ga0105955_112669	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1829
Ga0105955_119116	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1232
Ga0105955_119144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1230
Ga0105955_119790	All Organisms → Viruses → Predicted Viral	1188
Ga0105955_119902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1182
Ga0105955_120567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1143
Ga0105955_130936	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	730
Ga0105955_137834	Not Available	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105955_101656	Ga0105955_10165612	F049707	VVSEYKSPHNDGHDPYILIWEYGTEVQQAEFTERWAEYEPDTGWTVWHFRLEDGRVMKFRALEWEQRDDVNHLTTIYFVPKQKES*
Ga0105955_106929	Ga0105955_1069293	F043990	MIKKLGIIFTFGVIILGIVVYADHKIERSWIEGEFGVNMINMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNTTNGYYKYVVDENDDWNFGILIVDTARKEICIYNQIL*
Ga0105955_107060	Ga0105955_1070602	F059076	MTNRILLLGLLLGGVSINAQNINEINAAGKTKQKVGINTTIPTRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGSWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE*
Ga0105955_108427	Ga0105955_1084272	F063778	MPETISEGAQQKLLQQLQDALGLVAEADTSAHDVAAITHSATDGHQLTELMLQELTTAREYLKSCADQIEHAISNVKAIPLDPPPDD*
Ga0105955_112004	Ga0105955_1120043	F090516	MKSNLSTELFLAFERYFIENDEDVSLDKISSGFTDVVLGIEFLPQNMTEDIDKKKKLLKKYGFSSSTALAEDFRKRVLNIDEPIPEDFEKDGVGYVYTFISGYDTFYNRMYVFGIHCFGDYFEVTYFDLDNDAGAGDYYKGLEFYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDRLDVKIDIKPIPEEEKVVPMQEHLAKFLAFCGVKQEVIDENKERLLKALEEYTPDEYEGISEAMAEMMKYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARRILDLPLKAYFK*
Ga0105955_112669	Ga0105955_1126692	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASLVFIVIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESRIEKSKIKEIVVRKNHWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR*
Ga0105955_119116	Ga0105955_1191162	F084362	MFTVRWSDENNKPHSKTYATEADARKAKQWLLEHGVRDVDIAVKINNKPAGGLQDSEKQPEAAAEQKGFWWQE*
Ga0105955_119144	Ga0105955_1191442	F101358	MTEKYSASPAAKEETSASLPPRQPEHLLTQPITTDGTPQERATHPDTHIIPKRQDVPRHRWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSPLVERVLGRAE*
Ga0105955_119790	Ga0105955_1197903	F043991	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLDNGTEVSFYKGRNLIYADILFSKGIRTILFKCRQKKNLTRFISRVLELAQGEPSNIHPDFRA*
Ga0105955_119902	Ga0105955_1199022	F063778	MPETISEEAKQELLQQLQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQQMMAARGHLKSCADQIEYAISNIKAIPLDPPPDG*
Ga0105955_120567	Ga0105955_1205671	F092231	MIIFAPQEFITWTNTLVQFPWPIQVNDFSSYAEKLGWAPTSMPDEFGVCSGNNGGRVILGDDRSGYVYELFLRMASNEAEDDEGAAELNDHLVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSGSRAVLFQFFTPEGRWYFL*
Ga0105955_120567	Ga0105955_1205672	F092231	MIIFSPQDFITWANMLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNNNKFAMLGSNKEGNVYNLYLHMAVNEADDVEGAVELNDHLVSCVAAGRKEWGEPFLLEAGDDPTATWFFPCDMFAQVTGGFTAVLFQFFTPEGRWYFL*
Ga0105955_130936	Ga0105955_1309361	F042387	LVSCSRENDKMTDETLVNSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQSGEELGKTNYQYNNGKLSSVIDEAVISDSGIQYKKVITREYSYNSSEVSVNENVKYHSESYAYNLKDENFTHTYVLNGENIIKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSIN
Ga0105955_137834	Ga0105955_1378342	F084362	GYIRPRMNCTFTVRWSDDKDKPHAKTYATESDAKRARKWLLEHGVRSVDIAVKINNKPAGSLEDGDKPSEAEAEQKGFWWQE*