3300008075: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765620695 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008075
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053187 | Ga0114853
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765620695 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90520709
• Sequencing Scaffolds: 24
• Novel Protein Genes: 29
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F047127	Metagenome	150	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F067847	Metagenome	125	N
F074985	Metagenome	119	N
F081454	Metagenome	114	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F095631	Metagenome	105	N
F097527	Metagenome	104	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114853_100106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	45627
Ga0114853_100115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44037
Ga0114853_100183	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	34391
Ga0114853_100397	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	20068
Ga0114853_100430	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	19197
Ga0114853_100565	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	16192
Ga0114853_100799	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	12918
Ga0114853_100819	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	12674
Ga0114853_100940	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	11463
Ga0114853_101024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	10788
Ga0114853_101035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	10727
Ga0114853_101051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	10621
Ga0114853_101340	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	8929
Ga0114853_101928	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6759
Ga0114853_102067	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	6378
Ga0114853_102113	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	6266
Ga0114853_106001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2586
Ga0114853_107839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2051
Ga0114853_108344	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1942
Ga0114853_108491	All Organisms → cellular organisms → Bacteria	1911
Ga0114853_116509	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1048
Ga0114853_116804	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1029
Ga0114853_124158	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	738
Ga0114853_127303	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	658

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114853_100106	Ga0114853_10010610	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFGGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0114853_100106	Ga0114853_1001069	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAHKSKFTRHTMTNEKGHQSYDWVLENVELAADTIRYF*
Ga0114853_100115	Ga0114853_10011516	F103434	VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRTIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR*
Ga0114853_100115	Ga0114853_10011546	F101360	VSKENALRKAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGGPRISVRISGAQEERIRDLISTGDISLIEIEGGDA*
Ga0114853_100183	Ga0114853_10018326	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFNYRFELNTDNKIDKNVRLKVNDVHEMKATSDKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTDDNKLDISIIIA*
Ga0114853_100397	Ga0114853_1003978	F054111	MVFKNLEKESMNKPLDNITHETFLKLIEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILDKEILSLENQ*
Ga0114853_100430	Ga0114853_10043013	F059076	MTNRILLLGLLLGGVSINAQNINEINAAGKTKQKVGINTTIPTRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLVVDKIGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQHTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTEINFNQGGSAEGIGNSNTTYATQLQDFLQKLE*
Ga0114853_100565	Ga0114853_10056512	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRVFTKKINLDKFKKLRDGPSEQPVDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKGIYE*
Ga0114853_100565	Ga0114853_10056513	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSRQYTLNSLKKEFSAKPLMGQKEELSKEVSLPNTPKNWEAFTKKINLDKFKELKDGPSEQAFGGQDKVIIIKTNKKTYRKMNAYGNDHDRETWYDLLQIIAEEFEKI*
Ga0114853_100565	Ga0114853_1005659	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIKEILEKYNSK*
Ga0114853_100799	Ga0114853_1007992	F061927	MKKSIFILYAIFILGACSSDSAQKVTEKIKNAYSDGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0114853_100819	Ga0114853_1008195	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS*
Ga0114853_100940	Ga0114853_1009406	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLCPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQAAKQRILQRK*
Ga0114853_101024	Ga0114853_10102414	F097527	MIYFKMEKIGNSTKTEKKKTRSENLVIITIPAAGVEPARPCGHWILSP
Ga0114853_101035	Ga0114853_1010354	F063778	MPETISEGAQQKLLQQLQDALGLVAEADTSAHDVAAITHSATDGHQLTELMLQELTAAREYLKSCADQIEHAISNVKAIPLDPPPDD*
Ga0114853_101051	Ga0114853_1010513	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK*
Ga0114853_101051	Ga0114853_1010517	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRRGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQDFTDSYKETVK*
Ga0114853_101340	Ga0114853_1013409	F101358	MTEKHSASLPPRQPEHLLTQPITTDGTPKERATHLDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDAEIIDKDGTVLVRMTKPVHRSNIHQLGKCVPLAVLQEQNLDFTNAYLQRAYGVMMEDGRLQPVADTTHTASQSSATEQETEVLPAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSLLVERVLGRVKQ*
Ga0114853_101928	Ga0114853_10192811	F089056	MNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNIFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0114853_102067	Ga0114853_1020675	F064819	MILKDSQGKDRIKFSDIIRLNKEEPVFVKIKVRISTETMVSEENLDIERSDLEDLTRNLKDLSECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSINFSFQTDLNGIATFSKEISQELEKYK*
Ga0114853_102113	Ga0114853_1021134	F063777	LKVLNIKISALPPENNSFWMKLLFYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKGKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIIGEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNYKEQIEITISE*
Ga0114853_106001	Ga0114853_1060013	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSAATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETEDYYEEHELYSQVKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQKHLAKFLAFCGVEQDVIDENTERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSEWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFPEEDMPEIMRLAKILGIPLKAYFK*
Ga0114853_107839	Ga0114853_1078391	F063778	MPETISEEAKQELLRQLQDALGLVKDADTSAHDVAAITHSAADGHQLTEVMLQQVTAIEAYLKNCQVSINDAIGNIEAIPLDLPPED*
Ga0114853_108344	Ga0114853_1083442	F042387	MKKIILFFMAVFFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSALAAEFCSLDEKENTVADYLNFRWASHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQNVTTMVYEYNK*
Ga0114853_108491	Ga0114853_1084911	F030786	MKRTRIHKVVFQMLVVMIMTSSLQLLLKNGSATKGGNAMGTKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNS
Ga0114853_116509	Ga0114853_1165092	F061927	MKNPIFILSVILILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCVENKP*
Ga0114853_116804	Ga0114853_1168042	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKITKQVQQDPKYKELDDKLKETELNNL*
Ga0114853_124158	Ga0114853_1241581	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSTVKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNS
Ga0114853_127303	Ga0114853_1273031	F027205	VTGPRGLSLIERTHVASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPSPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPRRIKRSTK*