3300008067: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 5

Overview

Basic Information

• IMG/M Taxon OID: 3300008067
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118183 | Gp0131412 | Ga0110941
• Sample Name: Wastewater microbial communities from the hospital sewers in Singapore - Hospital 5
• Sequencing Status: Permanent Draft
• Sequencing Center: Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 156450033
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Microbial Communities From The Hospital Sewers
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From The Hospital Sewers

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Singapore
• Coordinates
  • Lat. (^o): 1.3
  • Long. (^o): 103.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009686	Metagenome / Metatranscriptome	314	Y
F034151	Metagenome / Metatranscriptome	175	Y
F044555	Metagenome / Metatranscriptome	154	N
F055715	Metagenome	138	N
F059106	Metagenome	134	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F087335	Metagenome	110	N
F092227	Metagenome	107	N
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110941_1016246	All Organisms → cellular organisms → Bacteria	4754
Ga0110941_1018213	All Organisms → cellular organisms → Bacteria	2496
Ga0110941_1021306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	3908
Ga0110941_1021307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	523
Ga0110941_1048120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	800
Ga0110941_1082707	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	564
Ga0110941_1131542	Not Available	527
Ga0110941_1144651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	826
Ga0110941_1160512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	677
Ga0110941_1172879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	548
Ga0110941_1226281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	606

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110941_1016246	Ga0110941_10162462	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINRRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEIC
Ga0110941_1016246	Ga0110941_10162464	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKYEIIKAIDFLRHSETPMGMCRIFDNQNHEFWHSVIKPWFQSERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDREDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0110941_1018213	Ga0110941_10182133	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR*
Ga0110941_1021306	Ga0110941_10213064	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV*
Ga0110941_1021306	Ga0110941_10213069	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDAYYNYSNTSNIHYEGGKFPS
Ga0110941_1021307	Ga0110941_10213072	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKKSHTLSKVWLSTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLDANQYKLYPLLLDILKISLKDAYHNYSNTSNIHYEGGKFPSMLTLQLFNLIF*
Ga0110941_1048120	Ga0110941_10481202	F055715	LTKANEFDKINELLIERTAKKFEKTSKNKLKKFLTNEKFCDKINKLSPRSKEFERTW*
Ga0110941_1082707	Ga0110941_10827072	F034151	MMKARLTPNMISFVTVRRGDWILKMSVYKNKQIMVIAHHCFDLEKLVIKCFYDQNTAVDFIDNLVKDDNEQN*
Ga0110941_1131542	Ga0110941_11315423	F009686	MNEREMFEKSFQRPSNYFKLSSQQQWKIDYELGILDWNGEDLTEEDIKRFKAHYER*
Ga0110941_1144651	Ga0110941_11446511	F059106	IVWKIRVILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV*
Ga0110941_1160512	Ga0110941_11605122	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEICILPCFYDAPLHKGLLYHLNDGTTLRIRPILNEAGEPELLIRCFTEETVEEMMEGVKP*
Ga0110941_1172879	Ga0110941_11728791	F092227	LMKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV*
Ga0110941_1226281	Ga0110941_12262812	F092227	MNEQKRKRTLRVGCLILAGVFLLSVLGSVILMFLV*