3300008060: Human stool microbial communities from NIH, USA - visit 1, subject 159227541 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008060
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053107 | Ga0114177
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159227541 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96209904
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042095	Metagenome	159	N
F073656	Metagenome	120	N
F074899	Metagenome / Metatranscriptome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114177_100037	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	157275
Ga0114177_100172	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	77941
Ga0114177_101430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12486
Ga0114177_106899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1452
Ga0114177_107525	All Organisms → cellular organisms → Bacteria	1307

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114177_100037	Ga0114177_100037164	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDNSYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGENNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDMPGLEFLVVSHTLYVNDGIPVDRLSRSKKLIYIGLSNMGQRMTVIPEAIISKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLDLSSCYLDRYIKEFNDLPKLKTLNITPAPSDMWNYFDINTLPFFEVDKINPNITDFYFLSDWMSGERRTGWNDDNMSGRGLEHLTGFIAANSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0114177_100172	Ga0114177_10017216	F073656	MTMEQEQDQEQTQAALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRCCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFADPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH*
Ga0114177_101430	Ga0114177_10143017	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSKMC*
Ga0114177_106899	Ga0114177_1068992	F074899	DPHGKMSGRKQWNKQAATSSFLDKKPLESLILQGMEGSTTLGKDEVGSSNLPSSSK*
Ga0114177_107525	Ga0114177_1075251	F026592	LRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE*