NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008059

3300008059: Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008059 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053090 | Ga0114166
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 763536994 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35260965
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101358Metagenome102Y
F103434Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114166_100001All Organisms → cellular organisms → Bacteria907329Open in IMG/M
Ga0114166_100059All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes42734Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114166_100001Ga0114166_100001422F101358MTEKHSASPTAKEETLAPLPPRQPEHLLTQPITVDGAPEKRTTHPDAYIIPKHENVPQYLWNVLRSSGQLDEGWIDTEIIDENDVVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTASQSSATEQETEILPTQSGNTYDHLGGDSARQLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0114166_100059Ga0114166_10005917F103434VVEVTLAVVKEGRTGRRFERGETFVIDKVLVQQSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVCCDTLGTESR*

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