3300008000: Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A

Overview

Basic Information

• IMG/M Taxon OID: 3300008000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111485 | Gp0127790 | Ga0105162
• Sample Name: Hot spring microbial communities from Jinze hot spring, China to study Microbial Dark Matter (Phase II) - JNZ 20120812A
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 235708933
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	9
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Baoshan, Yunnan, China
• Coordinates
  • Lat. (^o): 25.4413
  • Long. (^o): 98.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F020112	Metagenome	226	Y
F024925	Metagenome / Metatranscriptome	204	Y
F038537	Metagenome	165	Y
F051554	Metagenome	144	Y
F064214	Metagenome	129	Y
F078228	Metagenome	116	Y
F079345	Metagenome / Metatranscriptome	116	Y
F103293	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105162_1014803	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2184
Ga0105162_1017175	All Organisms → cellular organisms → Archaea → Euryarchaeota	1907
Ga0105162_1018239	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1807
Ga0105162_1018654	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1770
Ga0105162_1022275	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1501
Ga0105162_1033834	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1039
Ga0105162_1034351	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1026
Ga0105162_1041280	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	876
Ga0105162_1060038	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	643
Ga0105162_1073194	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	552
Ga0105162_1078691	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105162_1014803	Ga0105162_10148034	F020112	MEKEAPKTRIKGELQMISRAFRKCVELVEEMLGRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEKEVKTEKI*
Ga0105162_1017175	Ga0105162_10171752	F078228	MAKKFTMSMPDDMYAALEKERQRRKLGTIQELIRFIISDYFKEKTT*
Ga0105162_1018239	Ga0105162_10182393	F103293	MELQALRELSRPYEIYEFVPCHPVDFKVMRYEVGRITIAPRWPGAPPQKTVIAVRLHVDPTTKPTFPYYWDITPSRLVHQLAAMLAADFKPGRTIRIHRDIPGPKAHFTVQWL*
Ga0105162_1018654	Ga0105162_10186543	F079345	MLSKALNLELEDLSVLQRKLLLELVHRKHPHYWSKITGHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIHV*
Ga0105162_1022275	Ga0105162_10222752	F004454	VVEVREDLHREIRKLALLNDLRIYVLANAIIEDYLKDEQRVKALIKRLKLETGSPIH*
Ga0105162_1033834	Ga0105162_10338341	F038537	VITLLVKVWFWRDLYPIVKSFCREHNLPFNRVVNLALQSFLGSCDTEEFKLRARLSTLLREECELRRVQNVMLRSGSYLPSYVAKVLREPGRSLTHIPDAQRPLKALNPKEERVFRRIASRREQIAREIAEIEERLLRDVRPFRLKPDLHGRSRSRRRLCGKINLKEVKKLDGETA*
Ga0105162_1034351	Ga0105162_10343513	F038537	MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETA
Ga0105162_1041280	Ga0105162_10412801	F051554	MQLKYYVTFKAQEGSAEYSLKEKLINIEGVAIDTSVNKNKWQVPREDLQHIVESLKGAQLRVDHAESALMVVGKVVDAWIDGERVLFRAEVGEEKLIEKILRGYVSHVSIQVDSDEVECSKCKRQTRRDGMLIHLCPGAWEIVHKPRVRELSIVASPAYDNTEFKPLGFY
Ga0105162_1060038	Ga0105162_10600381	F024925	VRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEIITTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYRLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEA*
Ga0105162_1073194	Ga0105162_10731941	F024925	EVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEITTTTFQNLLSFKLKLLEKPILEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYKLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLL
Ga0105162_1078691	Ga0105162_10786912	F064214	VSGKGDLKVLVKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE*