3300007995: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160380657 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007995
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052936 | Ga0111049
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160380657 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43033307
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020492	Metagenome	223	Y
F027205	Metagenome	195	N
F035626	Metagenome / Metatranscriptome	171	Y
F071329	Metagenome	122	N
F081455	Metagenome	114	N
F097527	Metagenome	104	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111049_101612	All Organisms → Viruses → Predicted Viral	3022
Ga0111049_104248	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1567
Ga0111049_105126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1375
Ga0111049_110674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	793
Ga0111049_112447	Not Available	707
Ga0111049_117465	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Pucciniomycotina → Pucciniomycetes → Pucciniales → Pucciniaceae → Puccinia → Puccinia striiformis → Puccinia striiformis f. sp. tritici → Puccinia striiformis f. sp. tritici PST-78	545
Ga0111049_119027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111049_101612	Ga0111049_1016123	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED*
Ga0111049_104248	Ga0111049_1042484	F027205	VASRLIVSADDILKAVKESEAFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSTK*
Ga0111049_105126	Ga0111049_1051261	F097527	MEKIGNSTKTEKKKTRSENLVFITIPAAGVEPARPCGHWILSPAR
Ga0111049_110674	Ga0111049_1106742	F103436	MSNKGWRDKTDSEIFDSLGDWVMKCDLKYSKSDALYKVKLAQCLWGDDKYVEAVHLLDENEVFFEKSDWSYYALGIEILKARKHKFFDE*
Ga0111049_112447	Ga0111049_1124471	F081455	VNESLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPETEEVKTELVSTPDNGEAKVNVVFPKNEHILGNYVDYDSFNKIKESNTDKVVRAVRLLNYKMADQNAAMKFGQFVSEFNSECDPSKRLRYELIRHQGREKDLVVRLSTVINGTTKYYADIYPDLNKIDVDHHLISSARK*
Ga0111049_117465	Ga0111049_1174651	F035626	MASSIHNNAVQGETFLPGQIFVFGGFALRANSLGHLEQIEIYAPGRQVRFGSLNFTADIRGDLILDGFEPQPSVPHYRGEHDLALQPDSTLEAVLETTPIFNSGPAPQIEDGCLDTASGAAISVTIELNTIPVLCKARNS
Ga0111049_119027	Ga0111049_1190271	F020492	MGLQAALLTSVALTAEVGALKQDPERSERELDLAKKQLEDKEGE*