3300007993: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160704339 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007993
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053047 | Ga0113877
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160704339 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 93702665
• Sequencing Scaffolds: 25
• Novel Protein Genes: 30
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus mitis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F066860	Metagenome	126	N
F071327	Metagenome	122	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F092232	Metagenome	107	N
F095631	Metagenome	105	N
F095632	Metagenome	105	N
F097525	Metagenome	104	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113877_100004	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	239026
Ga0113877_100215	All Organisms → cellular organisms → Bacteria	32276
Ga0113877_100392	All Organisms → cellular organisms → Bacteria	21054
Ga0113877_100652	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	14298
Ga0113877_100812	All Organisms → cellular organisms → Bacteria	12299
Ga0113877_101161	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9670
Ga0113877_102025	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6157
Ga0113877_102784	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4816
Ga0113877_103113	All Organisms → Viruses → Predicted Viral	4384
Ga0113877_104115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3463
Ga0113877_104169	All Organisms → Viruses → Predicted Viral	3425
Ga0113877_104860	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3000
Ga0113877_105105	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2877
Ga0113877_106134	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	2452
Ga0113877_110997	All Organisms → Viruses → Predicted Viral	1482
Ga0113877_112780	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1291
Ga0113877_115477	All Organisms → cellular organisms → Bacteria	1091
Ga0113877_116400	Not Available	1034
Ga0113877_117809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus mitis	964
Ga0113877_118280	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	940
Ga0113877_118402	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	935
Ga0113877_118957	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	913
Ga0113877_118993	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	912
Ga0113877_132930	Not Available	543
Ga0113877_133098	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113877_100004	Ga0113877_100004181	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAASDKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA*
Ga0113877_100004	Ga0113877_10000451	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGSQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFIAAFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNIIGKIAPTKAFETQLRPAFINMEDSGSIIFED*
Ga0113877_100215	Ga0113877_10021527	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSAYDIDPSIDIGLAPTLPIAHWDGTSSTATMASLKHLRVYRPHSLHECILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQLS*
Ga0113877_100392	Ga0113877_1003923	F101358	MTEKYSASLPPPQPEHLLTQPITTDGTPQERATHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0113877_100652	Ga0113877_10065213	F095632	MIMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN*
Ga0113877_100812	Ga0113877_1008122	F066860	MTTKKQRLQKQQTIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI*
Ga0113877_101161	Ga0113877_1011612	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNATDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0113877_101161	Ga0113877_1011613	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFCKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0113877_101161	Ga0113877_1011617	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQESKFTRHTITNEKGHQSYDWVLENVEWAADTIRYF*
Ga0113877_101161	Ga0113877_1011618	F074985	MELTDGGWYKTPRIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILFKNIEEYEFIQYRPQQAWKAIHMGSTKRVNLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEITDLEQIKKALKSDEVSEVIVSGVPMRLVRVQEIAKGVLFFVFLDTSEKRRYYYARRTTKLRIVMDSKTGEKKYLLDHIKAMHID*
Ga0113877_102025	Ga0113877_1020251	F018385	MMADLVNSWLPYQELSIEKDRDPVTDDEIIYGNNVKHFTLTVYSPEGRVSKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFTYDGLNELVFMPDSRRRTVSQLSFDHVPMKEVK*
Ga0113877_102784	Ga0113877_1027846	F049707	VVSEYRSPHNDGHDPYILIWEYGNDAKRAEFSERWATFGEDGWTIWHFLLVDGGVMTFSSREWEQKDDVNHLTTIHFQPKIQNNERGNS*
Ga0113877_103113	Ga0113877_1031136	F027205	MRAVKESEEFERKALVEAQKRDRAAGKKPREVLYPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0113877_104115	Ga0113877_1041156	F081456	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLVITAIGFLFAAMTVILYTISAE*
Ga0113877_104169	Ga0113877_1041692	F018385	MMAEHVNRWDPYAEVPIETHRDPVKDDPFIYGVNVPHFTVTVYSLDGRVNKYWNARILEDLLGYCRIACPRDGKILKFKWSDWSVYMFSHEGLNELVFMPDSGRKIITQLFDKEVN*
Ga0113877_104860	Ga0113877_1048604	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVAS
Ga0113877_105105	Ga0113877_1051052	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKIISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYILNGENITKIHHEISKNVPGGHFYLNPNNMVVIDEEVTYDAKNSSYKNIKGFPVLAVEFCGLDKDENTIADYMNFRWVNHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKAKLDINNQTVTTMVYEYNK*
Ga0113877_106134	Ga0113877_1061343	F071327	VFGAFIFLLLQAHLSYKGAVSDVLRKTNFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYTYIKNNKQLSLKIVVIALVAALLFEYAYPWRLIFG*
Ga0113877_110997	Ga0113877_1109975	F051214	PGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
Ga0113877_112780	Ga0113877_1127801	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQIKKR
Ga0113877_115477	Ga0113877_1154772	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI*
Ga0113877_116400	Ga0113877_1164002	F097526	MQYLSAQSEAPAITPYTQDDYRRLCERLDDDTVAALLHAHIRAFAADGNRALLKRLTEGMRIAAEFKQAGRNGHPDTAEQARRAYWDCHFAALQQQARMAHCEIVNADNAAVSRLTAQCEKNGSCDTAIPSPHDDGYGFTAGLRVIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHEQYKSGQLQRDLRHTAAASGLAGTEAMQAAVPVSRQQDGRQSS*
Ga0113877_117809	Ga0113877_1178091	F041827	MKHFLSVLALGCLLLSCNRDLENNENNETPAPQNEKLVLLDKLREGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHEDDYILYEYTDDKGNVIGTKEVEVPVTVVGSTPKPVVVFEGDKPTEAKDAVTPGQGGTVGEPTTLPDT
Ga0113877_118280	Ga0113877_1182801	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQANKTWDYIT
Ga0113877_118402	Ga0113877_1184021	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHVEIED*
Ga0113877_118402	Ga0113877_1184022	F018385	MMGEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGQVSKYWNARILQDQLGRCRIACPRDGKVLCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0113877_118957	Ga0113877_1189571	F061927	MKKSIFILSAMFILGACSSDSAQKVTEKIKNAYSEGLRKTFIKEGIKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0113877_118993	Ga0113877_1189932	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSAFFVFIAIYLFDLYQNEFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQEEAEQIIKFLMNNR*
Ga0113877_132930	Ga0113877_1329301	F047508	PIHIGMLGHRPVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0113877_133098	Ga0113877_1330981	F030786	MLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDGDGADKIFENNNNRILNTINSQHISFNSQSAEYSKPQLFLLYQ