3300007991: Human stool microbial communities from NIH, USA - visit 1, subject 764649650 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007991
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052790 | Ga0105643
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764649650 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 189687798
• Sequencing Scaffolds: 20
• Novel Protein Genes: 26
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F032312	Metagenome / Metatranscriptome	180	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F056682	Metagenome	137	Y
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F067845	Metagenome	125	N
F068811	Metagenome	124	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F081354	Metagenome	114	Y
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F088920	Metagenome	109	Y
F090513	Metagenome	108	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105643_100296	Not Available	83493
Ga0105643_101050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	25064
Ga0105643_101297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	20008
Ga0105643_101855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13878
Ga0105643_101862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13831
Ga0105643_101901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	13510
Ga0105643_101943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13187
Ga0105643_103338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	7613
Ga0105643_103584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7072
Ga0105643_103847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	6555
Ga0105643_104042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6276
Ga0105643_104062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	6250
Ga0105643_104288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	5909
Ga0105643_104769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5321
Ga0105643_105467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4587
Ga0105643_106200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	4023
Ga0105643_106518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3813
Ga0105643_107797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3127
Ga0105643_109232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2637
Ga0105643_110393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2341

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105643_100296	Ga0105643_1002961	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISRLDYMGNIPMVPDLEKPIEIQVSTTRRIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSPR*
Ga0105643_100296	Ga0105643_100296100	F032312	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIVFLYGLVS*
Ga0105643_100296	Ga0105643_100296101	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDYLRHAETNLGSGIFDNQNHEFWHSVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRISGYWFPYYKKYIPHRIKVLKLALKD*
Ga0105643_100296	Ga0105643_1002963	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPNSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0105643_100296	Ga0105643_1002966	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0105643_100296	Ga0105643_1002968	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSLTYISDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0105643_100296	Ga0105643_10029698	F094005	MKKEVVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE*
Ga0105643_101050	Ga0105643_1010507	F088920	LNPKNHYFIFLFLAFFSFVSANLHHYPAFGAGVILHLILHFSQKVAIFAPKRAFSLLFVPTLFFAGLSVLSPQTSPKISGQTSLYQPWLSPYCLFKD*
Ga0105643_101297	Ga0105643_10129711	F074899	MSGRKQWNKQAATSSFLDKKPPKSLEQQGLEGSTVVGKDEVGSSNLPSSSNKTL*
Ga0105643_101855	Ga0105643_1018553	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSCLFGVKVF*
Ga0105643_101862	Ga0105643_10186210	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDNYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALGKDVK*
Ga0105643_101901	Ga0105643_1019014	F090513	MAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPFFTY*
Ga0105643_101943	Ga0105643_1019436	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLRIRNCSYGRFLYGGILMGIALPIPSHRAKLHDFAYWWPAAAGHSRSADALPEKSNS*
Ga0105643_103338	Ga0105643_1033384	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCIMPCFYDAPLRKGLLYHLDDGTMLRIRPILNEAGEPELLIRCFTEETVEEMMEGVKP*
Ga0105643_103584	Ga0105643_1035849	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKGWATPKKTEDSRLFGVKIF*
Ga0105643_103847	Ga0105643_1038473	F047126	VYLKTKKMTNISQIQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFVQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKTSKNVLTNACQSAIITKR*
Ga0105643_104042	Ga0105643_1040424	F068811	MDKMDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSISQYCNKKAAVLLILNENVSETLCIFSIDKTNCCRI*
Ga0105643_104062	Ga0105643_1040625	F044554	VLAGRFIPALCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSIPFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0105643_104288	Ga0105643_1042882	F056682	MKMQSRAGKVANQSVGQSEMHPASFWAFPSKNRSIFPIQELRKNRENQEVL*
Ga0105643_104769	Ga0105643_1047694	F026489	MAKENQKSASDFDALEPRKRGYSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0105643_105467	Ga0105643_1054673	F055715	LTKANEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN*
Ga0105643_106200	Ga0105643_1062007	F081354	LSAKKALDLVRENQQSSAHNFVKDFSPIFLKSSRYSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR*
Ga0105643_106518	Ga0105643_1065181	F029444	MEVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDS*
Ga0105643_107797	Ga0105643_1077973	F087336	MHCLLRGMVAELEQVPKAFRAADNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP*
Ga0105643_109232	Ga0105643_1092322	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR*
Ga0105643_110393	Ga0105643_1103933	F068855	VEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*