3300007969: Human stool microbial communities from NIH, USA - visit 2, subject 159369152 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007969
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053152 | Ga0114312
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 159369152 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 57754211
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047126	Metagenome	150	N
F068811	Metagenome	124	N
F087336	Metagenome	110	N
F088920	Metagenome	109	Y
F088921	Metagenome	109	N
F090513	Metagenome	108	N
F090515	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114312_102264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2981
Ga0114312_102424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2746
Ga0114312_103664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1671
Ga0114312_103942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1535
Ga0114312_106151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	940
Ga0114312_106185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	933
Ga0114312_106935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	826

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114312_102264	Ga0114312_1022646	F088920	SSCRVLLVCKVKPRKTTTSFFCFPHFFSFVSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAIPLLFVPTLFSARLTAFSLHTSPKISGQTSLHQPWLSPYCLFKD*
Ga0114312_102424	Ga0114312_1024242	F090515	VTTCCKAGQKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS*
Ga0114312_103664	Ga0114312_1036642	F088921	LGATIRLYKIGAGKNHFLYSEKSKSIVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKLAMIRDKMRSK*
Ga0114312_103942	Ga0114312_1039422	F087336	MVAELEQVPKAFRAADNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILPLKSKQKRAP*
Ga0114312_106151	Ga0114312_1061511	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNKNVSETLCIFSIDKTNCCRI*
Ga0114312_106185	Ga0114312_1061851	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGSLTQNPAALVETDDIFGVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRNFHILSKKLQKTC*
Ga0114312_106935	Ga0114312_1069352	F090513	MAKYVRKMEWKLLHIKHILYMQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT*