3300007917: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_1

Overview

Basic Information

• IMG/M Taxon OID: 3300007917
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118143 | Gp0128401 | Ga0111544
• Sample Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_1
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Liverpool
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90553585
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2
All Organisms → Viruses → unclassified viruses → Virus sp.	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): estuarine biome → estuary → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001416	Metagenome / Metatranscriptome	699	Y
F005882	Metagenome / Metatranscriptome	387	Y
F006008	Metagenome / Metatranscriptome	384	Y
F012934	Metagenome	276	Y
F021435	Metagenome	219	N
F034114	Metagenome / Metatranscriptome	175	Y
F066800	Metagenome / Metatranscriptome	126	Y
F097068	Metagenome	104	N
F103182	Metagenome	101	Y
F106103	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111544_1002969	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	3170
Ga0111544_1004818	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2326
Ga0111544_1005769	All Organisms → Viruses → unclassified viruses → Virus sp.	2076
Ga0111544_1009220	All Organisms → Viruses → Predicted Viral	1554
Ga0111544_1010982	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1392
Ga0111544_1011220	All Organisms → Viruses → unclassified viruses → Virus sp.	1372
Ga0111544_1011490	Not Available	1351
Ga0111544_1015267	All Organisms → Viruses → Predicted Viral	1125

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111544_1002969	Ga0111544_10029692	F066800	MATAKTRDFEVFETITANNAGNNKSIDLNTFINVADMEAFGLLAIEVGINATETTPETATFQAQIALQDLATGFISHADFDSLYLTYKNVLTGFEEESLSLGDVADVRYIPGGILQLRADRMSGASDVELYVRITGKIAKLSAADYMSLALTKSLSA*
Ga0111544_1004818	Ga0111544_10048183	F106103	MEQEIMHFWHDIDDKIQDLIQLIRSRHTRFNGTPVEKVIVRLVDAYRASGQVADAIDKGWLK*
Ga0111544_1005769	Ga0111544_10057694	F006008	MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADT
Ga0111544_1009220	Ga0111544_10092205	F097068	MVEDEVRRAHWKEHLIDENEELRNHVEAQHNFDNIPAERRIKTFEVKYDKDVVKAIYDRVKECREYYKTLIE*
Ga0111544_1010982	Ga0111544_10109822	F103182	MMDYKEETKDHTKMTKEEVFKDYGNVLSGVKSRSKIKTRRPPKKLKQCYKCGRVGDEMTKHSLTGEHKPPFIWLCRQPCHDEVHKFGIKMTQEEKAALKRQPPCSIQFPTENNIANPYTKLIEPESLYEQKFKQSFKRINSENKET*
Ga0111544_1011220	Ga0111544_10112201	F005882	YACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMLQLMQRQPNQQMNGGIQHNNKNLGG*
Ga0111544_1011220	Ga0111544_10112203	F001416	MPLVKKRLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVT
Ga0111544_1011490	Ga0111544_10114902	F034114	MPMIMVETSVAAGAVNSNLVSGSAFEFARSRQVCSVGLGQSATGGFATITSGPDMVVEEFMVPILTRYPIIPDEMYFTDVQEGGDRLVIRYRNPTGGALTVRAVVQTSPI*
Ga0111544_1015267	Ga0111544_10152671	F021435	MKCPQCAMPIKWQEQHEYEDFNLEGEGIINVHFCTNIDCNVEEVYIFQKDDA*
Ga0111544_1015267	Ga0111544_10152672	F012934	MNSLEILKAKINLKTTLIKFKSSLEELREKHEGRTDLINSMQESANDIEHFHSVFMQFEDEYYLECKANLRNQIIIAQHKHEIDKLKEIINDSKLEL*