3300007908: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1

Overview

Basic Information

• IMG/M Taxon OID: 3300007908
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118143 | Gp0131537 | Ga0111547
• Sample Name: Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_686d_1
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Liverpool
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76784824
• Sequencing Scaffolds: 9
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
Not Available	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2
All Organisms → cellular organisms → Archaea → TACK group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Anaerobic Oil Degrading Microbial Communities From River Tyne Estuarine Sediment

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): estuarine biome → estuary → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: United Kingdom
• Coordinates
  • Lat. (^o): 54.9632021
  • Long. (^o): -1.6348029
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002151	Metagenome / Metatranscriptome	589	Y
F006143	Metagenome	380	Y
F021528	Metagenome / Metatranscriptome	218	N
F025033	Metagenome	203	N
F030418	Metagenome	185	Y
F042655	Metagenome	158	Y
F049307	Metagenome / Metatranscriptome	147	Y
F051104	Metagenome / Metatranscriptome	144	Y
F077264	Metagenome / Metatranscriptome	117	Y
F103182	Metagenome	101	Y
F106103	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111547_1001790	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3610
Ga0111547_1002037	Not Available	3366
Ga0111547_1002796	All Organisms → cellular organisms → Bacteria	2851
Ga0111547_1003189	All Organisms → Viruses → Predicted Viral	2660
Ga0111547_1003961	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2368
Ga0111547_1004178	All Organisms → Viruses → Predicted Viral	2288
Ga0111547_1008334	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1546
Ga0111547_1011526	All Organisms → cellular organisms → Bacteria	1281
Ga0111547_1033067	All Organisms → cellular organisms → Archaea → TACK group	651

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111547_1001790	Ga0111547_10017904	F103182	MTKIEVYKDYGVFSSKSKSKTKTRRPPKKLQQCVKCGRVGDAMTKHSLTGEHKPPFVWLCRQPCHDEVHKFGLKMTEEEKAALKRQPQCTIQFPPEVDIANPLAKLIEPESLEGGKFKQSFKRMDSKNEERN*
Ga0111547_1002037	Ga0111547_10020373	F006143	MTDTETPIEEKKTPTTKFAEWLMARAEKKEAKETSLESLMKFNVFLSIATLVSVAGATVADYVLMAWLWI*
Ga0111547_1002796	Ga0111547_10027961	F021528	KAYLNTDNWNLTLKPLAGGRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLNKVEGELKERGVHTSLIEADMSRVDTFKNIEPEEPFSSYYSLFSLLKARKAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETTNLPNTMRFEHRLLNKQKIQNVYGFGKVAELFKGGYEVVKEKQVESWESSLFNFTAEELVLIGSKQLEQEMKRFKEKSPSGWFSKFLKAYGAYYLASFAGKEAVIEALKNAEAERTMIWRAVQKFEEAERELLILKQEEGSKKTLGALYEELRRKVCLN*
Ga0111547_1002796	Ga0111547_10027962	F051104	VFELRIAEAIEEEARLSQNLIEEGFLHAFKAGELIGEVKSILHSEGEVEGWLESNCSQVEREVLKSCMRLFNGETVSVQATKKEERTTKEKEVE*
Ga0111547_1003189	Ga0111547_10031894	F077264	MAYGKIWNLRADSTWIEAVKVQAIEAGRSNPGAYVRDLVWALANNPTIKNRIFEIMQGARYGQSR*
Ga0111547_1003961	Ga0111547_10039611	F030418	QNDPGLSQGFTGNMSIQPTNRDAGFFGDLGSTIGSFGSNVGQFFNDISPLTSLFGGGRSLPRTNSGTAISIDTGRPQETSQSGEILGASLGLAPALFQGARGLLRTPGGQTALGFGAGALGAAFAGNGSSAPRITRKMKSDVRRIYMMAGMDPAATAQILNNLGTYPRIDFNASVVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKNVADMYNSVCKPKPRSPRPRAAPKAVQLIKN*
Ga0111547_1003961	Ga0111547_10039614	F002151	MELSNYIALGCSIVAFALSVIACARIGKFSKATADTDWETLANLTGDIAALKRTCQTLNNRLNGMNKATIPQEQIIQQMLEHQNVEQIKRGG*
Ga0111547_1004178	Ga0111547_10041784	F106103	MEQEIMHFWHEIDDKIQDLIQLIRSRHTRFNGTPVEKVIVRLSDAYKASGQVADAIDKGWLQ*
Ga0111547_1008334	Ga0111547_10083342	F049307	MMLTPDEYMSLMRLITSERESEGSSLADRDGPPSPPVKKRSRSARRADKILSMAFKQANARYRKKDGSLRAGRTQADIARLAHKLRKKM*
Ga0111547_1008334	Ga0111547_10083343	F025033	MNRRIKRNRAVPIHITLAPGLLDEIDARLSHKMSRSNWIRGACEMKLDKDVTEVNDLTDKQLLNILRNRHNYDGPAEAILKSLLEVLSE*
Ga0111547_1011526	Ga0111547_10115262	F051104	LRIAEEIEKEAKLSQELIQEGFWHAFRAGELIQEVKSMLNWKEEREEAVEGWLEDNCSQVELSVLKNCRKLFNGETVKVEATKREQ*
Ga0111547_1033067	Ga0111547_10330671	F042655	SILSHQGKDNYVLNKEIKKPKRLNTELLELWLERELDIENPGSYGNLPTDEGHVTVQALPDGNYKLTISNACFGMIKSHVQPEPHSRRKLTDEDILRCWLEIKIEEDETEHRVKVKELK*